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. 2023 Oct 20;13(44):30753–30770. doi: 10.1039/d3ra05310e

The binding energy score of the target compounds during CDK-2 docking study.

Compound CDK-2 (PDB: 3DDQ)
Binding affinity (kcal mol−1) Distance from main residue (in Å) Interaction type
6d −7.9959 1.98 Leu83 H-acceptor
2.54 Lys33 Halogen bond
2.49 Lys89 H-acceptor
4.64 Ala144 Hydrophobic
4.25 Val18 Hydrophobic
4.61 Leu134 Hydrophobic
4.19 Ile10 Hydrophobic
6m −5.5006 2.46 Leu83 H-acceptor
4.48 Leu134 Hydrophobic
4.27 Ile10 Hydrophobic
4.54 Val18 Hydrophobic
4.61 Phe80 Hydrophobic
6o −8.0611 2.15 Leu83 H-acceptor
2.10 Lys33 Halogen bond
3.35 Glu51 Halogen bond
3.61 Leu134 Hydrophobic
3.72 Ala144 Hydrophobic
3.70 Val18 Hydrophobic
3.17 Ile10 Hydrophobic
Roscovitine −7.70482 2.23 Leu83 H-donor
2.74 Glu12 H-donor
4.24 Ala144 Hydrophobic
4.01 Ala31 Hydrophobic
4.44 Lys33 Hydrophobic
3.79 Val64 Hydrophobic
3.98 Val18 Hydrophobic