Table 5.
Relative abundance of genera belonging to the core microbiota from control group at weaning from each group at D7 and D21
| Taxa | D7 | D21 | ||||
|---|---|---|---|---|---|---|
| Control | TS | TP | Control | TS | TP | |
| p__Proteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Glaesserella | 0.0183 | 0.0601 | 0.0017 | 0.2754 | 0.1094 | 0.1490 |
| p__Bacteroidetes;o__Flavobacteriales;f__[Weeksellaceae];g__Bergeyella | 0.0000 | 0.0250 | 0.0000 | 0.1063 | 0.2005 | 0.0679 |
| p__Proteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Enhydrobacter | 0.1252 | 0.0013 | 0.0010 | 0.0876 | 0.1265 | 0.1616 |
| p__Firmicutes;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus | 0.0243 | 0.0249 | 0.0145 | 0.0320 | 0.0746 | 0.0368 |
| p__Proteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Caulobacter | 0.1005 | 0.0773 | 0.1593 | 0.0761 | 0.0801 | 0.1341 |
| p__Proteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella | 0.3518 | 0.0500 | 0.0476 | 0.0673 | 0.0298 | 0.0190 |
| p__Proteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium | 0.0495 | 0.0307 | 0.0705 | 0.0402 | 0.0718 | 0.0785 |
| p__Firmicutes;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus | 0.0174 | 0.0530 | 0.1236 | 0.0022 | 0.0095 | 0.0052 |
| p__Actinobacteria;o__Actinomycetales;f__Micrococcaceae;g__Rothia | 0.0069 | 0.0232 | 0.0100 | 0.0173 | 0.0026 | 0.0058 |
| p__Bacteroidetes;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides | 0.0008 | 0.0087 | 0.0214 | 0.0025 | 0.0018 | 0.0044 |
| p__Proteobacteria;o__Rhizobiales;__;__ | 0.0495 | 0.0307 | 0.0705 | 0.0003 | 0.0009 | 0.0017 |
| p__Bacteroidetes;o__Bacteroidales;f__Prevotellaceae;g__Prevotella | 0.0008 | 0.0090 | 0.0064 | 0.0012 | 0.0015 | 0.0010 |
| p__Firmicutes;o__Clostridiales;f__Ruminococcaceae;g__ | 0.0008 | 0.0046 | 0.0010 | 0.0020 | 0.0019 | 0.0009 |
| p__Proteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter | 0.0151 | 0.0996 | 0.0816 | 0.0018 | 0.0048 | 0.0151 |
| p__Proteobacteria;o__Rhizobiales;f__Bradyrhizobiaceae;g__Bradyrhizobium | 0.0064 | 0.0029 | 0.0078 | 0.0034 | 0.0035 | 0.0113 |
| p__Proteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;g__Escherichia | 0.0018 | 0.0104 | 0.0229 | 0.0055 | 0.0058 | 0.0071 |
| p__Firmicutes;o__Clostridiales;f__Clostridiaceae;g__Clostridium | 0.0025 | 0.0247 | 0.0047 | 0.0009 | 0.0014 | 0.0007 |
| p__Proteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Variovorax | 0.0060 | 0.0047 | 0.0083 | 0.0029 | 0.0072 | 0.0017 |
| p__Firmicutes;o__Clostridiales;f__;g__ | 0.0025 | 0.0247 | 0.0047 | 0.0020 | 0.0019 | 0.0009 |
| p__Firmicutes;o__Turicibacterales;f__Turicibacteraceae;g__Turicibacter | 0.0009 | 0.0049 | 0.0016 | 0.0013 | 0.0002 | 0.0015 |
Control, non-treated piglets born to non-treated sows; TS, piglets born to treated sows; TP, piglets treated with ceftiofur born to non-treated sows