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. Author manuscript; available in PMC: 2023 Oct 20.
Published in final edited form as: Cold Spring Harb Protoc. 2023 Jan 3;2023(1):22–34. doi: 10.1101/pdb.prot108067

TABLE 1.

Nextera XT adapter trim list

Name Sequence Reads When an adapter is found For reads without adapters
P5 AATGATACGGCGACCACCGAGATCTACACNNNNNNNN All Trim 3′ end Keep the read
P7 CAAGCAGAAGACGGCATACGAGATNNNNNNNN All Trim 3′ end Keep the read
Tagmentation read 1 TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG All Trim 3′ end Keep the read
Tagmentation read 2 GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAG All Trim 3′ end Keep the read