Table 2.

Statistical summary of the differentially abundant faecal bacterial taxa at the genus level

Comparison	Genus	fdr	Effect	Error min	Error max
cADpre vs. Healthy	Clostridum_sensu_stricto	0.0009	2.9500	1.4118	4.4882
	Staphylococcus	0.0000	5.6982	4.2895	7.1068
	Amedibacterium	0.0164	2.7795	0.8068	4.7522
	Blautia	0.0195	1.6524	0.4350	2.8698
	Anaerostipes	0.0000	3.4001	2.0319	4.7682
	Escherichia / Shigella	0.0164	2.4102	0.7242	4.0962
	Flavonifractor	0.0041	2.3061	0.9298	3.6824
	Fusobacterium	0.0000	− 5.2969	− 6.8852	− 3.7086
	Porphyromonas	0.0284	5.8251	1.2393	10.4108
cADpost vs. cADpre	Bacteroides	0.0000	− 1.1320	− 1.1734	− 1.0906
	Clostridum_sensu_stricto	0.0000	− 1.2757	− 1.4293	− 1.0906
	Romboutsia	0.0000	0.8737	0.5212	− 1.1221
	Terrisporobacter	0.0197	− 0.4578	− 0.8307	− 0.0848
	Staphylococcus	0.0000	2.1513	1.9130	2.3895
	Amedibacterium	0.0000	− 3.2703	− 3.4783	− 3.0623
	Erysipelatoclostridium	0.0003	− 0.9847	− 1.5052	− 0.4642
	Faecalimonas	0.0000	− 0.7794	− 0.8783	− 0.6806
	Lachinospiracea_incertae_sedis	0.0000	0.3221	0.2507	0.3936
	Roseburia	0.0000	1.4039	1.1311	1.6767
	Blautia	0.0000	− 1.1882	− 1.2569	− 1.1196
	Escherichia / Shigella	0.0000	− 0.5029	− 0.5435	− 0.4624
	Flavonifractor	0.0000	− 0.9294	− 1.0764	− 0.7824
	Enterocloster	0.0002	2.5604	1.2616	3.8592
	Anaerotignum	0.0000	1.4712	0.8140	2.1285
	Fusobacterium	0.0000	5.0975	4.8608	5.3343
	Proteus	0.0000	2.6491	2.5275	2.7707
	Porphyromonas	0.0000	4.8906	4.5019	5.2792
cADtreatment vs. Healthy	Clostridum_sensu_stricto	0.0000	1.5080	1.0417	1.9743
	Turicibacter	0.0758	4.9954	1.0507	8.9401
	Anaerotignum	0.0014	− 5.0315	− 7.6287	− 2.4342
	Faecalimonas	0.0000	− 1.0094	− 1.1468	− 0.8719
	Blautia	0.0889	1.8236	0.3075	3.3396
	Corynebacterium	0.0758	− 2.9621	− 5.2842	− 0.6399

Bacterial taxa with a composition greater than 1% (relative value > 0.01) are presented

0.000 in the fdr column denotes fdr corrected p values below 0.001