Key resources table
| REAGENT or RESOURCE | SOURCE | IDENTIFIER | ||
|---|---|---|---|---|
| Antibodies | ||||
| Anti-rhesus IgG1/3 [1B3]-HRP | Nonhuman Primate Reagent Resource (NHPRR) | AB_2819289 | ||
| ICS and ELISpots | 21st Century Biochemicals | M1R, A29L, A35R, and B6R (peptides) | ||
| Bacterial and virus strains | ||||
| mpox (hMPXV/USA/MA001/2022; Lineage B.1, Clade 2b; BEI NR-58622) | Barouch laboratory (this paper) | N/A | ||
| MVA:Luc (MVA luciferase reporter virus) | Dr. Mariano Esteban, Centro National de Biotechnologia, Madrid, Spain | N/A | ||
| VV:Luc (Vaccinia Western Reserve luciferase reporter virus) | Dr. David Bartlett, University of Pittsburgh, USA | N/A | ||
| Biological samples | ||||
| Chemicals, peptides, and recombinant proteins | ||||
| Critical commercial assays | ||||
| U-PLEX Assay Platform (Multiplex ELISA) | Meso Scale Discovery | MSD U-PLEX | ||
| NextSeq 500 System WGS Solution (bulk RNA-sequencing) | Illumina, Raczy et al. | NextSeq 500 | ||
| Deposited data | ||||
| Raw and analyzed data | This paper | GSE234118 | ||
| Experimental models: Cell lines | ||||
| HeLa | ATCC, Manassas, VA | CCL-2 | ||
| DF-1 | Dr. Mark Feinberg, Emory Vaccine Center | N/A | ||
| Experimental models: Organisms/strains | ||||
| rhesus monkeys (Macaca mulatta) | Bioqual, Rockville, MD | N/A | ||
| Oligonucleotides | ||||
| Recombinant DNA | ||||
| Software and algorithms | ||||
| R (version 4.1.3) | R Core Team | R.4.1.3 | ||
| STAR: RNA-seq aligner (version 2.7.10a) | Dobin et al. | STAR | ||
| R package: Classification And REgression Training (version 6.0–94) | Kuhn | caret | ||
| R package: mixOmics (version 6.24.0) | Lê Cao et al. | mixOmics | ||
| R package: Pam: prediction analysis for microarrays (version 1.56.1) | Hastie et al. | pamR | ||
| Gene Set Enrichment Analysis (version 4.2.3) | Subramanian et al., Mootha et al. | GSEA_4.2.3 | ||
| R package: Differential gene expression analysis based on the negative binomial distribution (version 1.40.1) | Love et al. | DESeq2 | ||
| GraphPad Prism 9.0.0 | GraphPad Software | N/A | ||
| VersaMax Tunable Microplate Reader | Molecular Devices | N/A | ||
| Other | ||||