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. Author manuscript; available in PMC: 2024 Oct 12.
Published in final edited form as: Cell. 2023 Sep 20;186(21):4652–4661.e13. doi: 10.1016/j.cell.2023.08.023

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-rhesus IgG1/3 [1B3]-HRP Nonhuman Primate Reagent Resource (NHPRR) AB_2819289
ICS and ELISpots 21st Century Biochemicals M1R, A29L, A35R, and B6R (peptides)
Bacterial and virus strains
mpox (hMPXV/USA/MA001/2022; Lineage B.1, Clade 2b; BEI NR-58622) Barouch laboratory (this paper) N/A
MVA:Luc (MVA luciferase reporter virus) Dr. Mariano Esteban, Centro National de Biotechnologia, Madrid, Spain N/A
VV:Luc (Vaccinia Western Reserve luciferase reporter virus) Dr. David Bartlett, University of Pittsburgh, USA N/A
Biological samples
Chemicals, peptides, and recombinant proteins
Critical commercial assays
U-PLEX Assay Platform (Multiplex ELISA) Meso Scale Discovery MSD U-PLEX
NextSeq 500 System WGS Solution (bulk RNA-sequencing) Illumina, Raczy et al. NextSeq 500
Deposited data
Raw and analyzed data This paper GSE234118
Experimental models: Cell lines
HeLa ATCC, Manassas, VA CCL-2
DF-1 Dr. Mark Feinberg, Emory Vaccine Center N/A
Experimental models: Organisms/strains
rhesus monkeys (Macaca mulatta) Bioqual, Rockville, MD N/A
Oligonucleotides
Recombinant DNA
Software and algorithms
R (version 4.1.3) R Core Team R.4.1.3
STAR: RNA-seq aligner (version 2.7.10a) Dobin et al. STAR
R package: Classification And REgression Training (version 6.0–94) Kuhn caret
R package: mixOmics (version 6.24.0) Lê Cao et al. mixOmics
R package: Pam: prediction analysis for microarrays (version 1.56.1) Hastie et al. pamR
Gene Set Enrichment Analysis (version 4.2.3) Subramanian et al., Mootha et al. GSEA_4.2.3
R package: Differential gene expression analysis based on the negative binomial distribution (version 1.40.1) Love et al. DESeq2
GraphPad Prism 9.0.0 GraphPad Software N/A
VersaMax Tunable Microplate Reader Molecular Devices N/A
Other