Table 2.
Whole transcriptome RNA sequencing. Concordance analysis of each gene expression signature (SETER/PR and PI3Kges) measured from cytospin slides versus fresh frozen RNAlater sample at each time point (day). Abbreviations: N, number of cases; CCC, concordance correlation coefficient; LCI, lower confidence interval; UCI, upper confidence interval; CS_C, cytospin slides fixed in Carnoy’s solution; CS_E, cystopin slides fixed in 95% ethanol.
| Signature | Duration (days) | Method | N | CCC | 95% LCI | 95% UCI | Rho | Bias |
|---|---|---|---|---|---|---|---|---|
| PI3Kges | 0 | CS_C | 10 | 0.96 | 0.87 | 0.99 | 0.97 | 0.99 |
| CS_E | 9 | 0.85 | 0.55 | 0.95 | 0.94 | 0.90 | ||
| 1 | CS_C | 10 | 0.96 | 0.85 | 0.99 | 0.97 | 0.99 | |
| CS_E | 10 | 0.77 | 0.44 | 0.92 | 0.89 | 0.87 | ||
| 4 | CS_C | 10 | 0.93 | 0.75 | 0.98 | 0.93 | 1.00 | |
| CS_E | 10 | 0.83 | 0.50 | 0.95 | 0.88 | 0.95 | ||
| 7 | CS_C | 10 | 0.93 | 0.76 | 0.98 | 0.95 | 0.98 | |
| CS_E | 10 | 0.64 | 0.14 | 0.88 | 0.71 | 0.91 | ||
| SET ER/PR | 0 | CS_C | 10 | 0.99 | 0.96 | 1.00 | 0.99 | 1.00 |
| CS_E | 9 | 0.97 | 0.88 | 0.99 | 0.98 | 0.99 | ||
| 1 | CS_C | 10 | 0.99 | 0.95 | 1.00 | 0.99 | 1.00 | |
| CS_E | 10 | 0.96 | 0.85 | 0.99 | 0.97 | 0.98 | ||
| 4 | CS_C | 10 | 0.94 | 0.79 | 0.98 | 0.97 | 0.97 | |
| CS_E | 10 | 0.99 | 0.95 | 1.00 | 0.99 | 0.99 | ||
| 7 | CS_C | 10 | 0.84 | 0.60 | 0.94 | 0.97 | 0.87 | |
| CS_E | 10 | 0.92 | 0.74 | 0.98 | 0.95 | 0.97 |