Antibodies
|
Mouse monoclonal anti Syt1 |
Synaptic Systems |
Cat# 105-011C2: RRID:AB_2619760
|
Chicken polyclonal anti MAP2 |
Encor |
CPCA-MAP2, RRID:AB_2138173
|
Rabbit polyclonal anti Syn1 |
Sudhof Lab |
Clone YZ6078, RRID: AB_2861225
|
Mouse monoclonal anti PSD95 |
Thermo |
Cat# MA146: RRID:AB_2092361
|
Rabbit polyclonal anti APP |
Ho et al., 2008 |
Clone U955 |
Mouse monoclonal anti APP |
Sigma |
Cat# MABN380: RRID: AB_2714163
|
Rabbit polyclonal anti CASK |
Neuromab |
Cat# O14936: RRID: AB_2877188
|
Rabbit polyclonal anti Fe65 |
Cao and Südhof, 2001
|
Clone 4194 |
Rabbit polyclonal anti Mint1 |
Ho et al., 2008 |
Clone P730 |
Rabbit polyclonal anti Nlgn1 |
Jahn Monoclonals |
Clone 4C12 |
Rabbit polyclonal anti pan-Nrxn |
Sclip and Südhof, 2020 |
Clone G394, RRID: AB_2800397 |
Rabbit polyclonal anti RIM1/2 |
Acuna et al., 2015 |
Clone U952 |
Rabbit polyclonal anti Stx1 a/b |
Zhou et al., 2012 |
Clone 438B |
Rabbit polyclonal anti PSD95 |
Patzke et al., 2019
|
Clone L667: RRID:AB_2800396
|
Mouse monoclonal anti L1CAM |
Sigma |
Cat# L4543: RRID:AB_609903
|
Rabbit monoclonal anti APP |
Abcam |
Cat# Ab32136: RRID: AB_2289606 |
Chemicals, Peptides, and Recombinant Proteins
|
Accutase |
Innovative Cell |
Cat# AT104 |
Gem21 Neuroplex supplement |
Gemini Bio |
Cat# 400–160 |
BDNF |
PeproTech |
Cat# 450–02 |
Doxycycline |
Sigma-Aldrich |
Cat# D9891 |
DMEM media |
Thermo Fisher |
Cat# 11965092 |
DMEM/F-12 media |
Thermo Fisher |
Cat# 11320082 |
HyClone fetal bovine serum (FBS) |
GE Healthcare |
Cat# SH30071.03 |
MEM media |
Thermo Fisher |
Cat# 51200038 |
Matrigel |
BD Biosciences |
Cat# 356230 |
mTeSR1 media |
Stem Cell Technologies |
Cat# 85850 |
N-2 supplement |
Thermo Fisher |
Cat# 17502048 |
Neurobasal-A Medium |
Thermo Fisher |
Cat# 10888022 |
NT-3 |
PeproTech |
Cat# 450–03 |
Puromycin |
Sigma-Aldrich |
Cat# P8833 |
Thiazovivin |
Bio Vision |
Cat# 1681 |
Laminin-1 |
Invitrogen |
Cat# 23017–015 |
Trypsin / EDTA |
Thermo Fisher |
Cat# 25300120 |
Papain, Suspension |
Worthington Biochemical |
Cat# LS003127
|
Cytosine arabinofuranoside (AraC) |
Sigma-Aldrich |
Cat# C6645 |
Glutamax |
Thermo Fisher |
Cat# 35050079 |
TTX |
Fisher Scientific |
Cat# 50-753-2807 |
EDTA |
Sigma-Aldrich |
Cat# E6758-100G |
Non-Essential Amino Acids |
Thermo Fisher |
Cat# 11140076 |
Human Holotransferrin |
Gemini Bio |
Cat# 800-131P |
Total Human Abeta ELISA |
Clonetech |
Cat# 27729A |
DMSO, Cell Culture Grade |
Sigma |
Cat# D2650 |
DAPT |
Tocris |
Cat# 2634 |
LY411575 |
Selleckchem |
Cat# S2714 |
Rosuvastatin |
Selleckchem |
Cat# S2169 |
Simvastatin |
Selleckchem |
Cat# S1792 |
TRIzol |
Invitrogen |
Cat# 15596026 |
RNeasy Plus Mini Kit |
Qiagen |
Cat# 74104 |
Filipin |
Sigma |
Cat# SAE0088 |
Amplex Red Cholesterol Kit |
Invitrogen |
Cat# A12216 |
Experimental Models: Cell Lines
|
Human H1-ESCs |
WiCell Research Institute |
Cat# WA01 |
HEK293T cells |
ATCC |
Cat# CRL-11268 |
Experimental Models: Organisms/Strains
|
CD-1 IGS mouse |
Charles River |
Cat# Crl:CD1(ICR) |
Quantitative qRT-PCR
|
Human ACAT2 |
IDT |
Hs.PT.56a.26153626 |
Human ACTB |
IDT |
Hs.PT.39a.22214847 |
Human DBH |
IDT |
Hs.PT.58.39251730 |
Human DHCR24 |
IDT |
Hs.PT.58.4561516 |
Human DHCR7 |
IDT |
Hs.PT.58.38763048 |
Human DUSP4 |
IDT |
Hs.PT.58.1640850 |
Human DUSP5 |
IDT |
Hs.PT.58.1558918 |
Human EGR1 |
IDT |
Hs.PT.58.40805543.g |
Human FDFT1 |
IDT |
Hs.PT.58.25526506 |
Human FOS |
IDT |
Hs.PT.58.15540029 |
Human HMGCR |
IDT |
Hs.PT.58.41105492 |
Human HMGCS1 |
IDT |
Hs.PT.58.4084870 |
Human IDI1 |
IDT |
Hs.PT.58.19303620 |
Human JUNB |
IDT |
Hs.PT.58.27174746.g |
Human LDHA |
IDT |
Hs.PT.58.22929122 |
Human LDLR |
IDT |
Hs.PT.58.2004261 |
Human LSS |
IDT |
Hs.PT.58.24976485 |
Human MAP2 |
IDT |
Hs.PT.58.20680759 |
Human MVD |
IDT |
Hs.PT.58.39035173 |
Human NAB2 |
IDT |
Hs.PT.58.24622150 |
Human NR4A1 |
IDT |
Hs.PT.58.20779713 |
Human SCD |
IDT |
Hs.PT.58.45714389 |
Human SREBF2 |
IDT |
Hs.PT.58.45335433 |
Human SV2C |
IDT |
Hs.PT.58.4640250 |
Human TH |
IDT |
Hs.PT.58.369742 |
Human TMEM97 |
IDT |
Hs.PT.58.40917738 |
Human VEGFA |
IDT |
Hs.PT.58.1149801 |
Human VGF |
IDT |
Hs.PT.58.26072166 |
Recombinant DNA
|
FUW-TetO-Ng2-T2A-puromycin |
Zhang et al., 2013
|
52047 Addgene (lentiviral vector) |
FUW-rtTA |
Zhang et al., 2013
|
20342 Addgene (lentiviral vector) |
FUW-TetO-EGFP |
Vierbuchen et al., 2010 |
30130 Addgene (lentiviral vector) |
pREV |
Dull et al., 1998 |
12253 Addgene (lentiviral helper vector) |
pRRE |
Dull et al., 1998 |
12251 Addgene (lentiviral helper vector) |
pVSVg |
Patzke et al., 2019
|
12259 Addgene (lentiviral helper vector) |
Deposited Datasets
|
Bulk RNA-seq data |
GEO |
GSE206102 |
Software and Algorithms
|
ImageJ |
NIH |
RRID: SCR_003070 |
ImageStudio software |
Li-Cor |
RRID:SCR_013715 |
pClamp |
Molecular Devices |
RRID:SCR_011323 |
Nikon NIS-Elements |
Nikon |
RRID:SCR_014329 |
GraphPad Prism |
GraphPad Prism |
RRID:SCR_002798 |
RStudio |
RStudio Team |
RRID:SCR_000432 |
DESeq2 |
Bioconductor (Love et al., 2014) |
RRID:SCR_015687 |