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. Author manuscript; available in PMC: 2024 Oct 5.
Published in final edited form as: Structure. 2023 Aug 24;31(10):1184–1199.e3. doi: 10.1016/j.str.2023.07.015

Table 1:

Conditions of NMR-biased MD simulationsa

Conditions # colvars, harmonic force constants (FC), kcal/mol/Å2 Replicates × length,μs RMSD validation restraints
Lipid-protein PREs+NOEs,b FC NOEs in protein,c FC (divergent trajectories)
Asp−1 830 55, 0.02 116, 0.05 5 × 0.3 1.9 ± 1.1
Asp−1 830, half of depth restraints 28, 0.02 116, 0.05 5 × 0.2 5.0 ± 5.5 (2)
Asp−1 830, no depth restraints 0, 0 116, 0.01 5 × 0.2 3.1 ± 2.5
Asp0 830 55, 0.02 116, 0.05 5 × 0.3 2.2 ± 1.0
Asp0 830, half of depth restraints 28, 0.02 116, 0.01 5 × 0.2 2.4 ± 1.1
Asp0 830, no depth restraints 0, 0 116, 0.01 5 × 0.2 3.5 ± 3.0 (1)
Asp0 820/830/839/843 55, 0.02 116, 0.05 5 × 0.3 2.4 ± 0.8
Asp0 820/830/839/843 28, 0.02 116, 0.01 5 × 0.2 7.8 ± 10.3 (1)
Asp0 820/830/839/843, no depth restraints 0, 0 116, 0.01 5 × 0.2 3.3 ± 2.3
a

Related to Tables S2 and S3.

b

The depth restraints are listed in Table S2.

c

The NOE restraints used within the polypeptide are listed in Table S3.