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. Author manuscript; available in PMC: 2023 Oct 23.
Published in final edited form as: Cell Rep. 2023 Jun 17;42(6):112656. doi: 10.1016/j.celrep.2023.112656

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER

Antibodies

Anti-MTF1 (H-300) rabbit polyclonal primary Santa Cruz Biotechnology Cat# Sc-48775; RRID:AB_2235184
Anti-MT rabbit (FL-61) polyclonal IgG primary Santa Cruz Biotechnology Cat# Sc-11377; RRID:AB_2146825
Anti-α-Tubulin mouse monoclonal primary Santa Cruz Biotechnology Cat# Sc-5266; RRID:AB_627308
Goat anti-mouse (H + L) IgG secondary Novus Biotechnology Cat# NB7539
Goat anti-Rabbit (H + L) IgG secondary Novus Biotechnology Cat# NB7160

Chemicals, peptides, and recombinant proteins

Tris(2-pyridylmethyl) amine 98% (TPA) Sigma-Aldrich Cat# 723134
Zinc chloride, anhydrous, 99.95% (metals basis) Aifa Aesar Cat# 87900
Zinc chloride, 0.1 M solution Sigma-Aldrich Cat# 39059
Chelex-100, sodium form Sigma-Aldrich Cat# C7901
Nonidet P-40 Sigma-Aldrich Cat# 74385
Sodium deoxycholate Sigma-Aldrich Cat# D6750
Protease and Phosphatase Inhibitor Cocktail (PPi) Thermo Scientific Cat# 78441
(S)-(+)-Camptothecin, ≥90% (HPLC), powder Sigma-Aldrch Cat# C9911
Janelia Fluor 669 Halo-Tag dye (JF669) Campus Laboratory of Luke Lavis, Janelia Research N/A
DMEM/F12, HEPES Thermo Fisher Scientific Cat# 11330057
Horse Serum, New Zealand origin Thermo Scientific Cat# 16050122
Hydrocortisone Sigma-Aldrich Cat# H4001
FiuoroBrite DMEM Fisher Cat# A18967–01
Gibco EGF Recombinant Human Protein Thermo Fisher Scientific Cat# PHG0313
Ham’s F12 phenol red Sigma Alridch Cat# N6658
Cholera Toxin Sigma-Aldrich Cat# C8052
Pen/Strep Gibco Cat# 15140–122
0.05% Trypsin-EDTA(1X) Gibco Cat# 25300–120
Hoechst 33258 Sigma-Aldrich Cat# 861405

Critical commercial assays

Annexin V Conjugates for apoptosis detection ThermoFisher Cat# A23204
CellTiter-Glo® 2.0 Cell Viability Assay Promega Cat# G9241
Amersham ECL Prime Western Blotting Detection Reagent GE Heaithcare Cat# RPN2232
Pierce BCA Protein Assay Kit Thermo Cat# S-11791

Experimentai modeis: Cell lines

Human: MCF10a ATCC Cat# CRL-10317; RRID:CVCL_0598
Human: MCF10a + PB-NES ZapCV2 and Lo. et ai.10; N/A
PB-H2B- mCherry (stable) PMID: 32014109
Human: MCF10a + PB-NLS ZapCV2 and PB-H2B- mCherry (stable) This paper N/A
Human: MCF10a + PB-NES ZapCV2 and PB-H2B-HaloTag + Scrambled mtfl- mCherry (stable) This paper N/A
Human: MCF10a + PB-NLS Zinc-dead and PB-H2B- mCherry (stable) This paper N/A
Human: MCF10a + PB-NES Zinc-dead and PB-H2B- mCherry (stable) This paper N/A
Human: MCF10a + PB-NES ZapCV2 and PB-H2B-HaloTag + shRNA mtfl knockdown-mCherry (stable) This paper N/A
Human: MCF10a + PB-NES ZapCV2 and PB-H2B-HaloTag + CSII-EF-DHB-mCherry This paper N/A

Recombinant DNA

Plasmid: PB-H2B-HaloTag (used for stable cell line generation) Grimm et al.51; PMID: 28869757 N/A
Plasmid: PB-H2B-mCherry (used for stable cell line generation) Published in previous Palmer lab paper; PMID: 32014109 N/A
Plasmid: PB-NES-ZapCV2 (used for stable cell line generation) Published in previous Palmer lab paper; PMID:27959493 N/A
Plasmid: PB-NLS-ZapCV2 (used for stable cell line generation) This paper Nuclear FRET sensor in Piggybac vector; NES sequence was replaced by NLS sequence; Submitted to Addgene
Plasmid: PB-NES-Zinc-dead (used for stable cell line generation) This paper Nuclear Zinc dead sensor in Piggybac vector; Zinc binding sequence is replaced by non-binding domain;
Submitted to Addgene
Plasmid: PB-NLS-Zinc-dead (used for stable cell line generation) This paper Nuclear Zinc dead sensor in Piggybac vector; Zinc binding sequence is replaced by non-binding domain
Plasmid: MTF1.34 human shRNA (used for MTF-1 KD mCherry stable cell line generation) This paper GeneCopoeia HSH011543–34-LVRU6MP Plasmid containing shRNA targeted to MTF-1 gene; Target sequence: CCAACTCTGTCCTAACTAATA; Submitted to Addgene
Plasmid: Used for MTF-1 Scrambled - mCherry stable cell line generation This paper GeneCopoeia CSHCTR001-LVRU6MP Plasmid containing non-specific scrambled shRNA; Target sequence: N/A
Plasmid: CSII-EF-DHB-mCherry Laboratory of Sabrina Spencer, CU Boulder CDK2 kinase translocation Sensor

Software and algorithms

BD FACSDiva Version 8 BD Biosciences N/A
Adobe Illustrator CS Adobe N/A
MATLAB 2017a and VR2020b Mathworks N/A
Prism Version 9.2.0 GraphPad N/A
Cell segmentation and tracking pipeline Elliptrack36 PMID: 32755578
Live-cell analysis pipeline live-cell-zinc-sensor https://doi.org/10.5281/zenodo.7968726