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Performance metrics of our model, outbreaker2, BadTrIP, and our model using only consensus genomes as an input.
| Model | Accuracy (SD) | Coverage Prob. (SD) | Specificity (SD) | Hit rate (SD) |
|---|---|---|---|---|
| This paper | 59.9% (18.1%) | 78.0% (10.3%) | 85.9% (21.0%) | 61.0% (19.5%) |
| BadTrIP | 41.0% (13.8%) | 77.8% (11.6%) | 59.8% (30.3%) | 51.9% (16.3%) |
| outbreaker2 | 33.0% (12.6%) | 60.0% (13.1%) | 77.1% (24.5%) | 33.1% (14.9%) |
| This paper, consensus genomes | 31.5% (14.4%) | 61.2% (13.7%) | 85.3% (17.9%) | 34.4% (16.7%) |
