Table 3.
List of candidate genes located within the identified QTLs.
| Trait | QTL name | Significant SNP | Chr | QTL position | No. of genes |
Candidate gene ID |
Gene annotation |
|---|---|---|---|---|---|---|---|
| PN-WW | qPN-WW4 | rs042851 | 4 | 32575507-32592587 | 0 | NA | NA |
| qPN-WW19.1 | rs194311,rs194316,rs194317 | 19 | 46284103-46530081 | 37 | Glyma.19G210900 | E3 ubiquitin-protein ligase BAH1 | |
| qPN-WW19.2 | rs194339 | 19 | 46792316-47006486 | 25 | Glyma.19G217000 | WRKY transcription factor 35 | |
| qPN-WW19.3 | rs194352 | 19 | 47278155-47341447 | 9 | Glyma.19G221600 | Polygalacturonase | |
| BM-WW | qBM-WW1 | rs012000,rs012001,rs012002 | 1 | 41066040-41250284 | 5 | Glyma.01G119500 | AMP deaminase |
| qBM-WW3 | rs030672,rs030673 | 3 | 6246003-6246085 | 1 | Glyma.03G048500 | Disease resistance protein | |
| qBM-WW15 | rs151122 | 15 | 17027720-17203787 | 9 | Glyma.15G178700 | Eukaryotic translation initiation factor 3 | |
| SW-WW | qSW-WW1 | rs012795 | 1 | 51274755 | NA | NA | |
| qSW-WW4 | rs041398,rs041399,rs041401 | 4 | 16307361-16520021 | 8 | Glyma.04G124800 | Protein ZINC INDUCED FACILITATOR-LIKE 1 | |
| qSW-WW20 | rs202237 | 20 | 37043984-37047052 | 1 | Glyma.20G129100 | Protein TIC 21 | |
| PN-DS | qPN-DS8.1 | rs081307 | 8 | 23302580-23778598 | 17 | Glyma.08G258800 | Aspartic proteinase-like protein 2 |
| qPN-DS8.2 | rs081390 | 8 | 24998891-25197286 | 3 | Glyma.08G261200 | Homocysteine S-methyltransferase 1 | |
| qPN-DS8.3 | rs081420 | 8 | 25808374-26012431 | 0 | NA | NA | |
| qPN-DS8.4 | rs081438 | 8 | 26079563-26228773 | 1 | Glyma.08G261700 | NA | |
| qPN-DS8.5 | rs081461,rs081462 | 8 | 26498358-26498365 | 0 | NA | NA | |
| qPN-DS8.6 | rs081509 | 8 | 27277729-27586943 | 1 | Glyma.08G262500 | U-box domain-containing protein 14 | |
| qPN-DS8.7 | rs081715,rs081722 | 8 | 30932153-31426811 | 3 | Glyma.08G265200 | Calcium-binding protein CML21 | |
| qPN-DS8.8 | rs081921,rs081922,rs081923 | 8 | 34768849-35264470 | 12 | Glyma.08G269800 | Floral homeotic protein APETALA 1 | |
| qPN-DS8.9 | rs082209 | 8 | 40748092-40990195 | 18 | Glyma.08G293300 | Transcription factor MYB1R1 | |
| BM-DS | qBM-DS17.1 | rs170162 | 17 | 3412747-3466772 | 1 | Glyma.17G045900 | Embryogenesis-associated protein EMB8 |
| qBM-DS17.2 | rs170177 | 17 | 3870840-4016954 | 19 | Glyma.17G052200 | UBP1-associated proteins 1C | |
| qBM-DS17.3 | rs170185 | 17 | 4029241-4068527 | 7 | Glyma.17G053500 | Casein kinase 1-like protein 1 | |
| qBM-DS17.4 | rs170193,rs170195,rs170199 | 17 | 4294571-4322918 | 20 | Glyma.17G057100 | WRKY transcription factor 11 | |
| qBM-DS17.5 | rs173557 | 17 | 38770868-38770949 | 1 | Glyma.17G232500 | RNA-binding protein 1 | |
| qBM-DS18 | rs184014,rs184015 | 18 | 37970702-38400499 | 8 | Glyma.18G164100 | 1-aminocyclopropane-1-carboxylate oxidase homolog 12 | |
| SW-DS | qSW-DS8 | rs080050,rs080051,rs080052,rs080053 | 8 | 1692570-1704747 | 2 | Glyma.08G020900 | Ethylene-responsive transcription factor CRF2 |