Table 1. Rate Constants kobs of B. subtilisglmS Ribozyme Cleavage Induced by Compounds (R)-2, (S)-2, (R)-3, (S)-3, Methylene Phosphonate C, Thia-GlcN6P 4, and GlcN6P.
kobs [min–1] |
|||||
---|---|---|---|---|---|
compound | pKa2 | @ 10 μM | @ 200 μM | @ 500 μM | @ 1 mM |
GlcN6P | 6.2 ± 0.1 | 0.820 ± 0.04 | 2.21 ± 0.18 | 2.49 ± 0.28 | n.d. |
C | 7.5 ± 0.1 | n.d. | 0.103 ± 0.004 | 0.332 ± 0.01 | 0.439 ± 0.05 |
(R)-2 | 7.2 ± 0.1 | n.d. | 0.069 ± 0.004 | 0.211 ± 0.01 | 0.270 ± 0.01 |
(S)-2 | n.d. | 0.078 ± 0.004 | 0.157 ± 0.01 | 0.362 ± 0.03 | |
(R)-3 | n.d. | 0.049 ± 0.002 | 0.174 ± 0.01 | 0.173 ± 0.01 | |
(S)-3 | 6.3 ± 0.1 | n.d. | n.d. | 0.091 ± 0.004 | 0.055 ± 0.003 |
4 | 1.09 ± 0.15 | 2.44 ± 0.12 | 2.36 ± 0.04 | n.d. |