Table 1.
Summary of the data used for simulation. Columns are number of cells (n_cells), number of unique genes expressed per cell on average in the RNA profile (nGene_RNA), total counts expressed per cell on average in RNA profile (nCount_RNA), number of unique fragments per cell on average in the ATAC profile (nFrag_ATAC), number of peak counts per cell on average in the ATAC profile (nPeakCount_ATAC)
| Source | n_cells | nGene_RNA | nCount_RNA | nFrag_ATAC | nPeakCount_ATAC |
|---|---|---|---|---|---|
| PBMC | 10085 | 2013 | 4463 | 15510 | 11305 |
| BMMC site 1 donor 2 (S1D2) | 6740 | 1365 | 2525 | 11064 | 7512 |
| BMMC site 1 or donor 1 | 29486 | 1205 | 2227 | 11798 | 7615 |
| Share-seq mouse skin | 32231 | 637 | 1245 | 5622 | 4231 |
| HPAP multiome | 13109 | 3651 | 13244 | 13462 | 8465 |
| HPAP scRNA-seq | 32115 | 4086 | 21032 | NA | NA |
| HPAP snATAC-seq | 26439 | NA | NA | 25098 | 16892 |