Skip to main content
. 2023 Oct 24;18(10):e0289736. doi: 10.1371/journal.pone.0289736

Table 2. Statistical topology tests comparing maximum likelihood (ML) and Bayesian (BA) phylogenetic results (= Tree).

logL = Log Likelihood value; deltaL = logL difference from maximal logL in the set; Bp-RELL = Bootstrap proportions using RELL method (weights sum to 1 across trees); p-KH = p-value of one-sided Kishino-Hasegawa test; p-SH = p-value of Shimodaira-Hasegawa test; c-ELW = Expected Likelihood Weight (weights sum to 1 across trees); p-AU = p-value of Approximately Unbiased test. A plus sign (+) next to a p-value denotes 95% confidence sets, whereas a minus sign (-) denotes a significant exclusion (i.e., the tree is rejected). All tests stemmed from 1,000 resamples using the RELL method.

Tree logL deltaL bp-RELL p-KH p-SH c-ELW p-AU
ML -9526.83 0.0 0.986 + 0.986 + 1.00 + 0.978 + 0.985 +
BA -9582.76 55.93 0.014 - 0.013 - 0.013 - 0.014 - 0.015 -