Table 1. Theoretical Evaluation of LS and DS Generated Modelsa.
Model | Actives | Decoy | TPs | FPs | TNs | FNs | Accuracy | Sensitivity | Specificity | YoA | EF |
---|---|---|---|---|---|---|---|---|---|---|---|
SB1 | 7 | 49 | 7 | 49 | 4852 | 88 | 0.97 | 0.07 | 0.99 | 0.13 | 6.57 |
SB2 | 6 | 69 | 6 | 69 | 4832 | 89 | 0.97 | 0.06 | 0.99 | 0.08 | 4.21 |
LB3 | 12 | 51 | 12 | 51 | 4850 | 83 | 0.97 | 0.13 | 0.99 | 0.19 | 10.02 |
LB4 | 8 | 15 | 8 | 15 | 4886 | 87 | 0.98 | 0.08 | 1.00 | 0.35 | 18.29 |
LB5 | 13 | 16 | 13 | 16 | 4885 | 82 | 0.98 | 0.14 | 1.00 | 0.45 | 23.57 |
LB6 | 5 | 24 | 5 | 24 | 4877 | 90 | 0.98 | 0.05 | 1.00 | 0.17 | 9.07 |
LB7 | 4 | 32 | 4 | 32 | 4869 | 91 | 0.98 | 0.04 | 0.99 | 0.11 | 5.84 |
LB8 | 3 | 18 | 3 | 18 | 4883 | 92 | 0.98 | 0.03 | 1.00 | 0.14 | 7.51 |
LB9 | 5 | 52 | 5 | 52 | 4849 | 90 | 0.97 | 0.05 | 0.99 | 0.09 | 4.61 |
LB10 | 5 | 58 | 5 | 58 | 4843 | 90 | 0.97 | 0.05 | 0.99 | 0.08 | 4.17 |
LB11 | 9 | 45 | 9 | 45 | 4856 | 86 | 0.97 | 0.09 | 0.99 | 0.17 | 8.76 |
DS2 | 10 | 49 | 10 | 49 | 4852 | 85 | 0.97 | 0.11 | 0.99 | 0.17 | 8.91 |
DS5 | 11 | 57 | 11 | 57 | 4844 | 84 | 0.97 | 0.12 | 0.99 | 0.16 | 8.51 |
DS8 | 10 | 74 | 10 | 74 | 4827 | 85 | 0.97 | 0.11 | 0.98 | 0.12 | 6.26 |
DS9 | 9 | 64 | 9 | 64 | 4837 | 86 | 0.97 | 0.09 | 0.99 | 0.12 | 6.48 |
DS12 | 15 | 86 | 15 | 86 | 4815 | 80 | 0.97 | 0.16 | 0.98 | 0.15 | 7.81 |
Combined | 89 | 677 | 89 | 677 | 4224 | 6 | 0.86 | 0.94 | 0.86 | 0.12 | 6.11 |
Each model was evaluated in relation to EF, YoA, and number of TPs.