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. 2023 Oct 4;622(7984):834–841. doi: 10.1038/s41586-023-06611-6

Extended Data Fig. 8. H3K4me3 demethylase Kdm5a rather than Kdm5b modulates Klf1 expression.

Extended Data Fig. 8

a, b, Expression of the indicated genes in primary cultured chondrocytes of mouse fetal growth plates upon conditional knockout of Hif-1α in either 20% O2 (a) or 1% O2 for 6 h (b). n = 3 biologically independent samples. c, d, Expression of the indicated genes in primary cultured chondrocytes of mouse fetal growth plates upon conditional knockout of Hif-2α in either 20% O2 (c) or 1% O2 for 6 h (d). n = 3 biologically independent samples. e, f, Expression of the indicated genes in primary cultured chondrocytes of mouse fetal growth plates upon conditional knockout of both Hif-1α and Hif-2α (Hif-1/2α) in either 20% O2 (e) or 1% O2 for 6 h (f). n = 3 biologically independent samples. g, Quantification of Kdm5a protein by Western blot analysis of total protein lysate extracted from Ctrl or si-Kdm5a primary cultured chondrocytes. A representative Western blot is shown on the left, and quantification of all biological replicates is provided on the right. Data were normalized to α-tubulin (n = 3 biologically independent experiments). For gel source data, see Supplementary Fig. 1k. h, Quantification of Kdm5b protein by Western blot analysis of total protein lysate extracted from Ctrl or si-Kdm5b primary cultured chondrocytes. A representative Western blot is shown on the left, and quantification of all biological replicates is provided on the right. Data were normalized to α-tubulin (n = 3 biologically independent experiments). For gel source data, see Supplementary Fig. 1l. i, j, Expression of the indicated genes in primary cultured chondrocytes upon knockdown of Kdm5a or Kdm5b in either 20% (i) or 1% O2 (j) for 6 h. n = 3 biologically independent experiments. k, l, ChIP-qPCR analysis results of H3K4me3 for the indicated genes in primary cultured chondrocytes siRNA depleted of Kdm5a in either 20% (k) or 1% O2 (l). The data are mean with SEM of triplicate experiments. P values were calculated using two-tailed Student’s t-test (a-f) or one-way ANOVA tests (g-l). The exact P-values of comparison are presented in the figures, respectively.

Source data