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. Author manuscript; available in PMC: 2024 Oct 1.
Published in final edited form as: Virology. 2023 Aug 19;587:109866. doi: 10.1016/j.virol.2023.109866

Table 1.

Summary of the reported splice donor and acceptor sites for JCV late coding region.

Nucleotide position Donor site Acceptor site Donor/Acceptor site sequence References
nt 315 + − tgaaggttagta Current work
nt 492 + − cataggtaagta Frisque et al., 1984
nt521 − + ttttcaggttca Frisque et al., 1984
nt 1426 − + cttttagggttg Frisque et al., 1984
nt 1585 + − cagaggtagaat Shishido-Hara et al., 2000, Saribas et al., 2018 and current work
nt 1635 − + atcttaggggtt Saribas et al., 2018
nt 1643 + − ttttagtaagtc Saribas et al., 2018
nt 1953 − + attacagaacaa Shishido-Hara et al., 2000, and current work

Splice site predictions: http://spliceport.cbcb.umd.edu

Note: Nucleotide numbering is according to the JCV Mad-1 strain (Accession number: 02226.1)