Key resources table
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Rabbit monoclonal GPX4 | Abcam | #ab125066 |
Mouse monoclonal CD31 | Vetana-Roche | #760–4378 |
Mouse monoclonal IgG1 CD68 | DAKO | #M0814 |
Deposited data | ||
RNA-sequencing data | Golkaram et. al. | PMID: 36536472 |
DNA-sequencing data | Golkaram et. al. | PMID: 36536472 |
Metabolomics data | This paper | |
Software and algorithms | ||
DESeq2 | Love et al. | PMID: 25516281 |
ssGSEA | Barbie et al. | PMID: 19847166 |
CiberSort | Newman et al. | PMID: 25822800 |
ESTIMATE | Yoshihara et al. | PMID: 24113773 |
fgsea | Korotkevich et al. | 10.18129/B9.bioc.fgsea |
phangorn | Schliep et al. | PMID: 21169378 |
performance | Lüdecke et al. | DOI: 10.21105/joss.03139 |
lme4 | Bates et al. | DOI: 10.18637//jss.v067.i01 |
pbkrtest | Halekoh et al. | DOI: 10.18627//jss.v059.i09 |
lifelines | Davidson-Pilon | DOI: 10.21105/joss.01317 |
survcomp | Schröder et al. | PMID: 21903630 |