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. 2023 Oct 22;24(20):15447. doi: 10.3390/ijms242015447
ACPs Anticancer peptides
non-ACPs Non-Anticancer peptides
AAC amino acid composition
DPC dipeptide composition
BPF binary profiles feature
PAAC pseudo-amino acid composition
g-gap DPC g-gap dipeptide composition
RBF radial basis function
ATC atomic composition
RAAAC reduced amino acid alphabet composition
CTD composition-transition-distribution
QSO quasi-sequence-order
AAIF amino acid index
GAAC grouped amino acid composition
Am-PAAC amphiphilic pseudo amino acid composition
OPF overlap property feature
TOBF twenty-one-bit feature
AKDC daptive skip dipeptide composition
CNN convolutional neural networks
GCN graph convolutional networks
SVM support vector machine
RF Random Forest
PNN probability neural network
GRNN generalized regression neural network
KNN k-nearest neighbors
RNN recurrent neural network
LSTM long short-term memory
CKSAAGP k-spaced amino acid group pairs
Bi-LSTM bidirectional long short-term memory network
NLP natural language processing
SMILES Simplified Molecular Input Line Entry System
BERT bidirectional encoder representation transformer
RoBerta robustly optimized BERT pre-training approach
BPE byte pair encoding
ChemBerta + ST ChemBERTa with a SMILES tokenizer
ChemBerta + BT ChemBERTa with a BPE’s tokenizer
TP True Positive
FP False Positive
TN True Negative
FN False Negative
ACC accuracy
MCC Matthews correlation
SE sensitivity
SP specificity
AUC area under curve
ROC receiver operating characteristic