Table 2.
Expression stability of seven candidate reference genes in S. rolfsii under different experimental conditions.
Conditions | Reference Gene | geNorm | Normfinder | Bestkeeper | ΔCt | ||||
---|---|---|---|---|---|---|---|---|---|
M | Rank | SV | Rank | CV + SD | Rank | Avg. SD | Rank | ||
Developmental stages | 18S | 2.07 | 5 | 3.28 | 6 | 0.35 | 1 | 3.38 | 6 |
28S | 2.45 | 6 | 3.34 | 7 | 0.39 | 2 | 3.42 | 7 | |
EF1α | 0.04 | 1 | 2.12 | 4 | 3.08 | 6 | 2.30 | 4 | |
GAPDH | 0.80 | 3 | 0.29 | 1 | 2.15 | 4 | 1.84 | 1 | |
PGK | 0.51 | 2 | 1.11 | 3 | 2.56 | 5 | 1.94 | 2 | |
β-TUB | 0.04 | 1 | 2.17 | 5 | 3.11 | 7 | 2.34 | 5 | |
UBC | 1.07 | 4 | 0.34 | 2 | 1.67 | 3 | 1.95 | 3 | |
Populations | 18S | 0.93 | 4 | 1.02 | 5 | 0.38 | 1 | 1.30 | 5 |
28S | 1.04 | 5 | 1.35 | 6 | 0.51 | 4 | 1.48 | 6 | |
EF1α | 0.51 | 2 | 0.39 | 2 | 0.77 | 5 | 1.01 | 2 | |
GAPDH | 0.67 | 3 | 0.72 | 4 | 0.90 | 6 | 1.14 | 4 | |
PGK | 0.16 | 1 | 0.33 | 1 | 0.40 | 2 | 0.97 | 1 | |
β-TUB | 1.25 | 6 | 1.65 | 7 | 1.44 | 7 | 1.76 | 7 | |
UBC | 0.16 | 1 | 0.58 | 3 | 0.44 | 3 | 1.05 | 3 | |
Fungicides | 18S | 0.65 | 4 | 0.58 | 5 | 0.46 | 2 | 0.77 | 5 |
28S | 0.68 | 5 | 0.51 | 4 | 0.27 | 1 | 0.74 | 4 | |
EF1α | 0.40 | 2 | 0.62 | 6 | 0.77 | 5 | 0.78 | 6 | |
GAPDH | 0.33 | 1 | 0.34 | 1 | 0.78 | 6 | 0.64 | 1 | |
PGK | 0.56 | 3 | 0.41 | 2 | 0.57 | 3 | 0.69 | 2 | |
β-TUB | 0.33 | 1 | 0.49 | 3 | 0.78 | 7 | 0.69 | 3 | |
UBC | 0.75 | 6 | 0.80 | 7 | 0.64 | 4 | 0.91 | 7 | |
Photoperiods | 18S | 0.21 | 4 | 0.38 | 5 | 0.48 | 5 | 0.64 | 5 |
28S | 0.10 | 3 | 0.02 | 4 | 0.16 | 1 | 0.53 | 4 | |
EF1α | 0.03 | 1 | 0.01 | 2 | 0.26 | 3 | 0.50 | 1 | |
GAPDH | 0.39 | 5 | 0.97 | 6 | 0.80 | 6 | 1.01 | 6 | |
PGK | 0.03 | 1 | 0.01 | 1 | 0.28 | 4 | 0.50 | 2 | |
β-TUB | 0.09 | 2 | 0.02 | 3 | 0.18 | 2 | 0.51 | 3 | |
UBC | 0.78 | 6 | 1.77 | 7 | 0.90 | 7 | 1.77 | 7 | |
pHs | 18S | 0.48 | 6 | 0.61 | 7 | 0.30 | 4 | 0.67 | 7 |
28S | 0.23 | 3 | 0.20 | 3 | 0.30 | 3 | 0.41 | 4 | |
EF1α | 0.11 | 1 | 0.18 | 2 | 0.38 | 5 | 0.38 | 2 | |
GAPDH | 0.41 | 5 | 0.49 | 5 | 0.13 | 1 | 0.60 | 6 | |
PGK | 0.17 | 2 | 0.24 | 4 | 0.39 | 6 | 0.40 | 3 | |
β-TUB | 0.11 | 1 | 0.06 | 1 | 0.29 | 2 | 0.35 | 1 | |
UBC | 0.30 | 4 | 0.50 | 6 | 0.48 | 7 | 0.56 | 5 | |
Total | 18S | 1.22 | 5 | 1.21 | 5 | 0.41 | 2 | 1.46 | 5 |
28S | 1.34 | 6 | 1.52 | 7 | 0.40 | 1 | 1.65 | 7 | |
EF1α | 0.55 | 1 | 0.93 | 4 | 1.38 | 6 | 1.24 | 3 | |
GAPDH | 0.55 | 1 | 0.65 | 2 | 1.23 | 5 | 1.15 | 2 | |
PGK | 0.62 | 2 | 0.42 | 1 | 0.99 | 4 | 1.11 | 1 | |
β-TUB | 0.76 | 3 | 1.32 | 6 | 1.52 | 7 | 1.50 | 6 | |
UBC | 0.99 | 4 | 0.71 | 3 | 0.73 | 3 | 1.26 | 4 |
Note: M, expression stability value; SV, stability value; CV + SD, coefficient of variation and standard deviation; Avg. SD, average standard deviation.