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. 2023 Sep 25;11(10):2385. doi: 10.3390/microorganisms11102385

Table 1.

Genomic features of strains KMM 9576T, KMM 9553, and type strains of closely related Rhizobiaceae genera.

Feature 1 2 3 4 5 6 7 8 9
Assembly level contig contig contig scaffolds scaffolds scaffolds contig contig contig
Genome size (Mb) 5.3 5.5 7.9 7.3 6.8 6.8 5.5 7.0 6.9
Number of contigs 67 94 108 3 3 190 27 53 62
G + C Content (mol%) 61.5 61.4 60.5 62 61 60.5 59 59.5 61.5
N50 (Kb) 350 212 413 4071 4218 312 481 476 303
L50 5 8 5 1 1 8 4 7 7
Coverage 61× 41× 50× 75× 592× - 54× 92× 12×
Total genes 4981 5244 7623 6937 6424 6631 5396 6675 6685
Protein coding genes 4819 5054 7246 6722 6111 6275 5146 6621 6438
rRNAs (5S/16S/23S) 1/1/1 1/1/1 1/1/1 5/5/5 3/3/3 2 1/1/1 1/1/1 1/1/1
tRNA 45 46 46 64 55 48 51 51 49
checkM completeness (%) 98.24 100 99.69 94.94 96.29 99.28 94.71 99.78 97.29
checkM contamination (%) 0.04 0.22 0.55 4.5 1.61 1.37 6.06 1.32 2.41
WGS project JALDYZ01 JALDYY01 QBLB01 JNAE01 CP120373, CP120374, CP120375 ARBG01 VZPW01 BAYX01 QFBC01
Genome assembly ASM3002890
v1
ASM3002885
v1
ASM305838
v1
ASM69796
v2
ASM2989206
v1
ASM37960
v1
ASM880138
v1
ASM69609
v1
ASM312232
v1

Strains: 1, KMM 9576T; 2, KMM 9553; 3, R. leguminosarum USDA 2370T; 4, E. adhaerens ATCC 33212T (Casida A); 5, E. garamanticus LMG 24692T (=S. garamanticum LMG 24692T); 6, P. giardinii H152T (R. giardinii bv. giardinii H152T); 7, A. radiobacter CCUG 3354T (=A. tumefaciens CCUG 3354T); 8, R. rhizogenes NBRC 13257T (=A. rhizogenes NBRC 13257T); 9, “R. album” NS-104T.