Table 1.
Feature | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 |
---|---|---|---|---|---|---|---|---|---|
Assembly level | contig | contig | contig | scaffolds | scaffolds | scaffolds | contig | contig | contig |
Genome size (Mb) | 5.3 | 5.5 | 7.9 | 7.3 | 6.8 | 6.8 | 5.5 | 7.0 | 6.9 |
Number of contigs | 67 | 94 | 108 | 3 | 3 | 190 | 27 | 53 | 62 |
G + C Content (mol%) | 61.5 | 61.4 | 60.5 | 62 | 61 | 60.5 | 59 | 59.5 | 61.5 |
N50 (Kb) | 350 | 212 | 413 | 4071 | 4218 | 312 | 481 | 476 | 303 |
L50 | 5 | 8 | 5 | 1 | 1 | 8 | 4 | 7 | 7 |
Coverage | 61× | 41× | 50× | 75× | 592× | - | 54× | 92× | 12× |
Total genes | 4981 | 5244 | 7623 | 6937 | 6424 | 6631 | 5396 | 6675 | 6685 |
Protein coding genes | 4819 | 5054 | 7246 | 6722 | 6111 | 6275 | 5146 | 6621 | 6438 |
rRNAs (5S/16S/23S) | 1/1/1 | 1/1/1 | 1/1/1 | 5/5/5 | 3/3/3 | 2 | 1/1/1 | 1/1/1 | 1/1/1 |
tRNA | 45 | 46 | 46 | 64 | 55 | 48 | 51 | 51 | 49 |
checkM completeness (%) | 98.24 | 100 | 99.69 | 94.94 | 96.29 | 99.28 | 94.71 | 99.78 | 97.29 |
checkM contamination (%) | 0.04 | 0.22 | 0.55 | 4.5 | 1.61 | 1.37 | 6.06 | 1.32 | 2.41 |
WGS project | JALDYZ01 | JALDYY01 | QBLB01 | JNAE01 | CP120373, CP120374, CP120375 | ARBG01 | VZPW01 | BAYX01 | QFBC01 |
Genome assembly | ASM3002890 v1 |
ASM3002885 v1 |
ASM305838 v1 |
ASM69796 v2 |
ASM2989206 v1 |
ASM37960 v1 |
ASM880138 v1 |
ASM69609 v1 |
ASM312232 v1 |
Strains: 1, KMM 9576T; 2, KMM 9553; 3, R. leguminosarum USDA 2370T; 4, E. adhaerens ATCC 33212T (Casida A); 5, E. garamanticus LMG 24692T (=S. garamanticum LMG 24692T); 6, P. giardinii H152T (R. giardinii bv. giardinii H152T); 7, A. radiobacter CCUG 3354T (=A. tumefaciens CCUG 3354T); 8, R. rhizogenes NBRC 13257T (=A. rhizogenes NBRC 13257T); 9, “R. album” NS-104T.