TABLE 3.
16S rDNA analysis of mastodon isolates
| Sample no. | Origina | Isolate | FAME identification | MIDI index | Biochemical identification | Closest relative (16S rRNA) | % 16S rRNA similarity |
|---|---|---|---|---|---|---|---|
| Enterobacteriaceae isolates | |||||||
| Burning Tree | |||||||
| 1 | IM | 101.03.37 | Enterobacter cloacae | 0.135 | Enterobacter cloacaeb | E. coli | 95.4 |
| 101.05.25 | Y. enterocolitica | 0.512 | Pseudomonas sp.b | R. aquatilis | 99.8 | ||
| 101.07.25 | Y. enterocolitica | 0.584 | Pseudomonas sp.b | R. aquatilis | 99.8 | ||
| 102.05.25 | Y. enterocolitica | 0.624 | Pseudomonas sp.b | R. aquatilis | 99.8 | ||
| 6 | E6.25.18 | Yersinia sp. | 0.297 | NDc | R. aquatilis | 99.3 | |
| 4 | B | 401.04.37 | Enterobacter cloacae | 0.477 | Aeromonas salmonicidad | E. coli | 95.6 |
| B | 402.03.25 | Enterobacter cloacae | 0.761 | Enterobacter cloacaeb | C. freundii | 98.0 | |
| Heisler | |||||||
| 18 | CA | 18.37.BG.02 | Y. enterocolitica | 0.351 | Enterobacter sp.e | H. alvei | 97.8 |
| Obligately anaerobic isolates | |||||||
| Burning Tree | |||||||
| 8 | B | 8.37.71 | Bacteroides strain D19 | 0.069 | ND | C. mangenotii | 98.5 |
| 12 | Sed | 12-13 | Bacteroides strain D19 | 0.294 | ND | C. subterminale | 92.4 |
| 12-6 | Fusobacterium necrophorum | 0.001 | ND | C. subterminale | 91.7 | ||
| 12-12 | Bacteroides strain D19 | 0.168 | ND | C. mangenotii | 98.5 | ||
| 14 | Sed | 14-1 | Fusobacterium necrophorum | 0.003 | ND | C. subterminale | 92.6 |
| 14-2 | Bacteroides strain D19 | 0.080 | ND | C. subterminale | 91.4 | ||
| 14-19 | Bacteroides strain D19 | 0.138 | ND | C. mangenotii | 98.1 | ||
| Heisler | |||||||
| 17 | CA | 17-3 | Bacteroides strain D19 | 0.008 | ND | C. bifermentans | 98.9 |
| 22 | Sed | 22-6 | F. perfoetens | 0.032 | ND | C. xylanolyticum | 98.3 |
IM, intestinal mass; B, bone-associated sample Sed, background sediment; CA, clastic anchor.
API-20E test strip.
ND, not determined.
Rapid NFT test strip.
Enterotube.