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. 1998 Feb;64(2):651–658. doi: 10.1128/aem.64.2.651-658.1998

TABLE 3.

16S rDNA analysis of mastodon isolates

Sample no. Origina Isolate FAME identification MIDI index Biochemical identification Closest relative (16S rRNA) % 16S rRNA similarity
Enterobacteriaceae isolates
 Burning Tree
  1 IM 101.03.37 Enterobacter cloacae 0.135 Enterobacter cloacaeb E. coli 95.4
101.05.25 Y. enterocolitica 0.512 Pseudomonas sp.b R. aquatilis 99.8
101.07.25 Y. enterocolitica 0.584 Pseudomonas sp.b R. aquatilis 99.8
102.05.25 Y. enterocolitica 0.624 Pseudomonas sp.b R. aquatilis 99.8
  6 E6.25.18 Yersinia sp. 0.297 NDc R. aquatilis 99.3
  4 B 401.04.37 Enterobacter cloacae 0.477 Aeromonas salmonicidad E. coli 95.6
B 402.03.25 Enterobacter cloacae 0.761 Enterobacter cloacaeb C. freundii 98.0
 Heisler
  18 CA 18.37.BG.02 Y. enterocolitica 0.351 Enterobacter sp.e H. alvei 97.8
Obligately anaerobic isolates
 Burning Tree
  8 B 8.37.71 Bacteroides strain D19 0.069 ND C. mangenotii 98.5
  12 Sed 12-13 Bacteroides strain D19 0.294 ND C. subterminale 92.4
12-6 Fusobacterium necrophorum 0.001 ND C. subterminale 91.7
12-12 Bacteroides strain D19 0.168 ND C. mangenotii 98.5
  14 Sed 14-1 Fusobacterium necrophorum 0.003 ND C. subterminale 92.6
14-2 Bacteroides strain D19 0.080 ND C. subterminale 91.4
14-19 Bacteroides strain D19 0.138 ND C. mangenotii 98.1
 Heisler
  17 CA 17-3 Bacteroides strain D19 0.008 ND C. bifermentans 98.9
  22 Sed 22-6 F. perfoetens 0.032 ND C. xylanolyticum 98.3
a

IM, intestinal mass; B, bone-associated sample Sed, background sediment; CA, clastic anchor. 

b

API-20E test strip. 

c

ND, not determined. 

d

Rapid NFT test strip. 

e

Enterotube.