Table 4.

Number of genes and polymorphisms of the QTLs before and after filtering using the parental allelic effects detected in control or stressed growth conditions and exhibiting a confidence interval (CI) smaller than 3Mb. CG, candidate genes; CP candidate polymorphism; Cer, Cervil; Crio, Criollo; Fer, Ferum; LA0, LA0147; LA14, LA1420; Lev, Levovil; Plov, Plovdiv; Stup, Stupicke. Filtered nb CG, retained CG after filtering for contrasting allelic effect of parents; seed exp CG, number of filtered CG with transcripts present in seed tissues. C, control; S, heat stress conditions; GermC, germination capacity. Parental effects and filters are presented in Table S1.

Marker	Trait	Chr	ci_Mb	Nb Gene	Nb pol	Filtered nb CG	Filtered nb CP	Seed exp CG	Seed exp CP
X01_78197981	t50_S	1	1.97	238	24,566	238	10,979	174	8496
X01_78925532	longevity_S	1	1.97	213	20,457	141	687	108	570
X02_35922016	t50.1_C	2	2.35	278	22,018	277	16,611	222	13,788
X02_36220609	longevity_C	2	2.35	293	37,679	231	3033	185	2542
X02_43477320	t50.2_C	2	2.12	278	18,239	228	2427	197	2095
X02_44746073	t80t20_C	2	0.95	141	7106	123	1339	76	190
X02_44814312	longevity_P	2	2.42	354	31,866	236	1596	199	1374
X03_60247504	t80t20_C	3	2.47	332	23,667	284	2698	230	2274
X04_59595681	t50.1_P	4	1.56	145	20,401	73	219	65	208
X04_60240094	t50_C	4	1.37	151	18,014	10	16	6	12
X04_62201077	t50_S	4	2.59	333	24,049	23	36	17	28
X04_62339583	t50.2_P	4	0.71	97	4402	18	32	14	27
X05_4985019	longevity_P	5	1.56	162	30,192	155	4608	117	3581
X06_33306736	germC_C	6	1.8	132	27,051	98	451	76	354
X07_2671204	t50_C	7	2.23	218	14,125	176	1070	147	813
X09_1062246	longevity_S	9	0.64	88	8951	30	97	28	85
X09_1759444	longevity_C	9	2.83	308	45,197	226	6398	181	5033
X10_2344795	t50_S	10	1.37	121	2257	76	498	54	270
X11_50118788	t50_C	11	1.4	156	10,643	24	123	20	115
X11_504246	germination_P	11	2	283	23,523	203	1406	166	1180
X12_64391888	longevity_P	12	1.99	332	22,890	241	1434	173	1025