There are direct (synthesis or degradation of neurotransmitters and their precursors) and indirect (synthesis of microbial metabolites with systemic pleiotropic effects) actions. In the indirect actions the main metabolites, SCFAs and tryptophan (trp) derived metabolites, are represented. Red arrows represent the result of pathological condition of BD, meaning the increased or decreased level in certain metabolic routes. Decreased levels of butyrate and propionate besides increased levels of acetate have been related to higher depressive symptoms. Tryptamine levels are risen whereas tryptophan levels are decreased in BD. Kynurenine pathway is also altered in BD and it seems to be related to neuroinflammation, bacterial translocation, HPA dysfunction, neuromodulation. As shown, a peripheral decrease in many metabolites of the Kyn pathway is shown, with specific differences in manic versus depressive stages and inversely correlated with certain gut microbiota populations (Oscillibacter genera). Glutamate concentration, abnormal SCFAs production and decreased trp, all confluence in less enteric serotonin (5HT) production due to decreased stimulation of enteroendocrine cells (EECs). All these mechanisms disruption contribute to bidirectional intestinal inflammation-neuroinflammation. Central nervous system (CNS) also sends signals activating vagus nerve. Studying local and systemic levels of SCFAs in patients with BD can be of aid to better understand microbiota–gut–brain (MGB) axis disruption in this malady. More studies focusing on its different phases and types are needed. This scenario is just the beginning of new therapeutical approaches. GM gut microbiota, DA dopamine, AC acetylcholine, NE norepinephrine, his histamine, GABA gamma-aminobutyric acid, EECs enteroendocrine cells, 5HT serotonin, SCFAs short-chain fatty acids, trp tryptophan, kyn kynurenine, KYNA Kynurenic acid, XA Xanthurenic acid, QA Quinolic acid, Tregs T regulator cells, ILC innate lymphoid cell, BBB blood–brain barrier, CNS central nervous system; (+): activates.