TABLE 2.
Genomic location | % of integrationsb
|
|||||
---|---|---|---|---|---|---|
Random | SBc | ASVd | MLVde | HIV-1df | ASLVg | |
In RefSeq genes | 33.2 | 39.1h | 53.0h | 50.7h | 83.4h | 38.2h |
5 kb upstream of genes | 2.9 | 3.8 | 5.1h | 13.0h | 3.4 | ND |
±5 kb from transcription start site | 5.4 | 8.5h | 8.9h | 21.4h | 11.4h | ND |
±5 kb from CpG islands | 8.3 | 11.2h | ND | ND | ND | ND |
±1 kb from CpG islands | 1.9 | 2.5 | 2.8 | 15.2h | 1.9 | 3.2 |
Compared with integration frequencies of ASV, MLV, HIV-1, and ASLV. Results from the present study are boldfaced.
Values shown for ASV, MLV, HIV-1, and ASLV represent the expected integration frequencies for each vector after the values originally reported were normalized according to the random integration frequencies shown. ND, not determined.
SB integrations were compared to 10,000 computer-simulated random integrations and analyzed by using a χ2 test for statistical significance.
Adjusted values from the work of Narezkina et al. (41).
Adjusted values from the work of Wu et al. (58).
Adjusted values from the work of Schröder et al. (50).
Adjusted values from the work of Mitchell et al. (36).
Values are distinguishable from those for random integration (P ≤ 0.03).