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. 2005 Mar;25(6):2085–2094. doi: 10.1128/MCB.25.6.2085-2094.2005

TABLE 5.

Target site analysis for 1,309 unique genomic SB insertionsa

Nucleotide No. of insertion sites with the indicated nucleotide at position:
−5 −4 −3 −2 −1 T A +1 +2 +3 +4 +5 +6 +15
A 461 284 904 214 615 0 1,309 194 553 228 426 288 463 379
C 230 350 68 327 226 0 0 257 230 111 260 344 223 240
G 337 233 120 227 247 0 0 230 325 51 341 214 262 225
T 282 442 217 541 221 1,309 0 628 201 919 282 463 361 465
    Consensusb R C A Y A T A T R T G Y A T
a

The base composition of the 60-bp region encompassing the TA target dinucleotide (underlined) was determined and compared to that of 10,000 randomly selected genomic coordinates. The random nucleotide frequencies at each position were identical to the genome average: 30% for A, 20% for C, 20% for G, and 30% for T. Only positions at which significant deviation between the two groups was observed (P < 0.01 by the χ2 test) are shown.

b

R stands for A or G; Y stands for C or T.