TABLE 5.
Nucleotide | No. of insertion sites with the indicated nucleotide at position:
|
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
−5 | −4 | −3 | −2 | −1 | T | A | +1 | +2 | +3 | +4 | +5 | +6 | +15 | |
A | 461 | 284 | 904 | 214 | 615 | 0 | 1,309 | 194 | 553 | 228 | 426 | 288 | 463 | 379 |
C | 230 | 350 | 68 | 327 | 226 | 0 | 0 | 257 | 230 | 111 | 260 | 344 | 223 | 240 |
G | 337 | 233 | 120 | 227 | 247 | 0 | 0 | 230 | 325 | 51 | 341 | 214 | 262 | 225 |
T | 282 | 442 | 217 | 541 | 221 | 1,309 | 0 | 628 | 201 | 919 | 282 | 463 | 361 | 465 |
Consensusb | R | C | A | Y | A | T | A | T | R | T | G | Y | A | T |
The base composition of the 60-bp region encompassing the TA target dinucleotide (underlined) was determined and compared to that of 10,000 randomly selected genomic coordinates. The random nucleotide frequencies at each position were identical to the genome average: 30% for A, 20% for C, 20% for G, and 30% for T. Only positions at which significant deviation between the two groups was observed (P < 0.01 by the χ2 test) are shown.
R stands for A or G; Y stands for C or T.