TABLE 1.
1976 Nzara-Boniface | 1976 Nzara-Maridi | 1979 Maleo | 2000 Gulu-200011676 | 2004 Yambio- HCM/SAV/017 | 2012 Kibaale | 2012 Luwero-Ebo639 | 2011 Nakisamata | Mubende variant, all sequences | |
---|---|---|---|---|---|---|---|---|---|
1976 Nzara-Boniface, MH121162 | |||||||||
1976 Nzara-Maridi, MK952150 | 100 | ||||||||
1979 Maleo, KC242783 | 99.8 | 99.8 | |||||||
2000 Gulu-200011676, KU182912 | 96.4 | 96.4 | 96.5 | ||||||
2004 Yambio-HCM/SAV/017, MH121169 | 99.7 | 99.7 | 99.8 | 96.4 | |||||
2012 Kibaale, KC545389-91 | 96.3 | 96.3 | 96.4 | 99.7 | 96.3 | ||||
2012 Luwero-Ebo639, KC589025 | 96.4 | 96.4 | 96.5 | 99.4 | 96.4 | 99.1 | |||
2011 Nakisamata, JN638998 | 96.4 | 96.4 | 96.5 | 100 | 96.4 | 99.7 | 99.4 | ||
Mubende variant, all sequences | 96.1 | 96.1 | 96.3 | 99.7 | 96.1 | 99.4 | 99.1 | 99.7 | 99.7 |
We compared the GP amino acid sequences between historic SUDV sequences and sequences from the Mubende outbreak (n = 112). Eight strains with incomplete GP coverage were removed from the analysis. When comparing multiple sequences (e.g., Kibaale, Mubende), we selected the lowest similarity score. The Mubende vs Mubende comparison represents the amount of intra-outbreak GP similarity.