Skip to main content
. 2023 May 22;58(10):836–846.e6. doi: 10.1016/j.devcel.2023.03.021
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit monoclonal anti-Ki67 Abcam Cat# ab16667; RRID: AB_302459
Mouse monoclonal anti-Ascl1 (Clone 24B72D11.1) kindly gifted by F. Guillemot (Francis Crick Institute, UK). Urbán et al.47 N/A
Mouse monoclonal anti-p53 Cell Signaling Cat# 2524; RRID_331743
Rabbit polyclonal anti-GFAP Agilent Cat# Z0344;
RRID: AB_10013382
Mouse monoclonal anti-Sox2 Abcam Cat# ab79351;RRID: AB_10710406
Mouse monoclonal anti-Nestin Santa Cruz Cat# sc-33677; RRID: AB_627995
Monoclonal anti-mCD24 PE (Clone M1/69) BD Pharmingen Cat# 12-0242-82; RRID: AB_465602
Monoclonal anti-mCD133 Biotin (Clone 13A4) eBioscience Cat# 13-1331-82; RRID: AB_466591
PE-Cy7 conjugated streptavidin eBioscience Cat# 25-4317-82; RRID: AB_10116480
Rabbit polyclonal anti-RFP Antibodies Online Cat# ABIN129578
RRID: AB_10781500
Monoclonal anti-mCD24 eFluor (Clone M1/69) eBioscience Cat# 48-0242-82; RRID: AB_1311169
Monoclonal anti-PPAR alpha Arigo Biolaboratories Cat# ARG55240; N/A

Bacterial and Virus Strains

Ad-CMV-iCre Vector Biolabs Cat# 1045
Ad-CMV-Null Vector Biolabs Cat# 1300

Chemicals, Peptides, and Recombinant Proteins

EGF-complexed to Alexa Fluor™ 647 ThermoFisher Cat# E35351
Tamoxifen Sigma Cat# T5648
EdU (5-ethynyl-2′-deoxyuridine) Santa Cruz Cat# sc-284628
Fish oil Sigma Cat# F8020
PPARa agonist WY-14643 Sigma Cat# C7081
Etomoxir Sigma Cat# E1905
Palmitic acid Sigma Cat# P5585
BSA Conjugated Docosahexaenoic Acid (DHA, 22:6n-3) Cloud-Clone Corp Cat# CPO122Ge11
BSA-conjugated Eicosapentaenoic Acid (EPA, 20:5n-3) Cloud-Clone Corp Cat# CPO632Ge11

Critical Commercial Assays

Zombie Green™ Fixable Viability Kit BioLegend Cat# 423111
Click-iT™ EdU Alexa Fluor™ 647 Imaging kit Life Technologies Cat# C10340
Click-iT™ EdU Alexa Fluor™ 647 Flow Cytometry assay Life Technologies Cat# C10419
Fatty Acid Oxidation Assay kit Abcam Cat# ab217602
Extracellular Oxygen Consumption Assay kit Abcam Cat# ab197243
iScript gDNA clear cDNA synthesis kit Bio-rad Cat# 1725034

Deposited Data

RNA-seq data This paper GEO: GSE165801
CUT&RUN data This paper GEO: GSE165802
Codega et al RNA-seq dataset Codega et al.9 GEO: GSE54653
Llorens-Bobadilla et al RNA-seq dataset Llorens-Bobadilla et al.10 GEO: GSE67833
Mizrak et al RNA-seq dataset Mizrak et al.11 GEO: GSE109447

Experimental Models: Cell Lines

Mouse: Primary mouse NPCs isolated at P9–P12 This paper N/A
Mouse: Primary mouse brain microvascular endothelial cells Cell Biologics Cat# C57-6023

Experimental Models: Organisms/Strains

Mouse: FVB/N-Tg(GFAPGFP)14Mes/J The Jackson Laboratory Cat# Jax003257; RRID: IMSR_JAX:003257
Mouse: B6.Cg-Gt(ROSA)26Sortm14(CAG-tdTomato)Hze/J The Jackson Laboratory Cat# 007914 RRID: IMSR_JAX:007914
Mouse: p53LoxP/LoxP Marino et al.48 N/A
Mouse: GLAST::CreERT Mori et al.49 N/A
Mouse: C57Bl/6J Charles River RRID: IMSR_JAX:000664

Oligonucleotides

See Table S2 for primer sequences N/A

Software and Algorithms

Fiji ImageJ Schindelin et al.50 https://imagej.net/Fiji
FlowJo version 10.6.2 Becton, Dickinson and Company https://www.flowjo.com/
TopHat v.2.0.11 Kim et al.51 https://ccb.jhu.edu/software/tophat/index.shtml
DESeq2 Bioconductor package Love et al.52 http://bioconductor.org/packages/release/bioc/html/DESeq2.html
HTSeq v.0.6.1 Anders et al.53 http://htseq.readthedocs.io/en/release_0.9.1/overview.html
Trimmomatic v.036 Bolger et al.54 http://www.usadellab.org/cms/index.php?page=trimmomatic
Bowtie2 v2.3.4.3 Langmead and Salzberg55 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Chippeakanno R package v3.20.1 Zhu et al.56 https://www.bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html
VLAD Richardson and Bult57 http://proto.informatics.jax.org/prototypes/vlad/
MACS2 v2.1.1 Zhang et al.58 https://hbctraining.github.io/Intro-to-ChIPseq/lessons/05_peak_calling_macs.html
g:Profiler package Raudvere et al.59 https://biit.cs.ut.ee/gprofiler/gost