Figure | Comparison | N | Test | Estimate | t stat | CI | p value |
---|---|---|---|---|---|---|---|
1F | comparison of locomotion modulation indices for SST control and SST with VIP ablated | Ctrl: 7 mice, 600 cells w/out VIP: 5 mice, 277 cells | linear mixed-effects model | 0.140 | 2.566 | [0.033, 0.247] | 0.010a |
1I | comparison of locomotion modulation indices for PN control and PN with VIP ablated | Ctrl: 6 mice, 1,679 cells w/out VIP: 6 mice, 1,585 cells | linear mixed-effects model | 0.048 | 1.726 | [−0.007, 0.104] | 0.084 |
2D, top | comparison of surround suppression indices during quiescence (Q) for SST control and SST with VIP ablated | Ctrl: 6 mice, 86 cells w/out VIP: 4 mice, 30 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.930 | −3.620 | [−1.439, −0.422] | <0.001a |
2D, bottom | comparison of surround suppression indices during locomotion (L) for SST control and SST with VIP ablated | Ctrl: 6 mice, 101 cells w/out VIP: 4 mice, 36 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.217 | −0.909 | [−0.684, 0.250] | 0.366 |
2F, top | comparison of surround suppression indices during Q for PN control and PN with VIP ablated | Ctrl: 6 mice, 279 cells w/out VIP: 5 mice, 175 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.545 | −4.288 | [−0.795, −0.295] | <0.001a |
2F, bottom | comparison of surround suppression indices during L for PN control and PN with VIP ablated | Ctrl: 6 mice, 314 cells w/out VIP: 5 mice, 165 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.423 | −2.775 | [−0.724, −0.123] | 0.006a |
3E, left | comparison of false alarm rates for saline-injected mice during light-stimulation-on trials and light-off trials | 7 mice | paired t test | N/A | N/A | [−0.063, 0.052] | 0.812 |
3E, right | comparison of false alarm rates for GtACR2-injected mice during light-stimulation-on trials and light-off trials | 8 mice | paired t test | N/A | N/A | [−0.019, 0.040] | 0.444 |
3F, left | comparison of shift for saline-injected and GtACR2-injected (opto) mice for 100° stimuli | saline: 7 mice; GtACR2: 8 mice | unpaired t test | N/A | N/A | [0.268, 0.897] | 0.002a |
3F, right | comparison of shift for saline-injected and GtACR2-injected (opto) mice for 20° stimuli | saline: 4 mice; GtACR2: 3 mice | unpaired t test | N/A | N/A | [0.338, 2.459] | 0.019 |
S1C, left | comparison of VIP cell density in control and VIP-ablated mice 10 days post-injection | saline: 3 mice; caspase: 3 mice | unpaired t test | N/A | N/A | [−51.53, 175.52] | 0.204 |
S1C, middle | comparison of VIP cell density in control and VIP-ablated mice 14 days post-injection | saline: 3 mice; caspase: 3 mice | unpaired t test | N/A | N/A | [76.07, 283.96] | 0.009a |
S1C, right | comparison of VIP cell density in control and VIP-ablated mice 21 days post-injection | saline: 3 mice; caspase: 3 mice | unpaired t test | N/A | N/A | [148.66, 275.64] | <0.001a |
S1D | comparison of VIP cell density in behavioral control mice and behavioral VIP-ablated mice | saline: 4 mice; caspase: 4 mice | unpaired t test | N/A | N/A | [151.21, 309.09] | <0.001a |
S1E, left | noise correlations of SST | Ctrl: 6 mice, 2,180 cell pairs w/out VIP: 4 mice, 447 cell pairs | linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) |
βstate = 0.045 βexp = −0.031 βstate*exp = 0.071 |
4.282 −0.580 2.812 |
[0.024, 0.065] [−0.135, 0.073] [0.022, 0.121] |
<0.001a 0.562 0.005a |
S1E, right | noise correlations of PN | Ctrl: 5 mice, 1,077 cell pairs w/out VIP: 6 mice, 2,481 cell pairs | linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) |
βstate = 0.007 βexp = 0.023 βstate*exp = 0.024 |
0.569 1.130 1.763 |
[−0.016, 0.029] [−0.017, 0.064] [−0.003, 0.051] |
0.569 0.259 0.078 |
S1F, left | noise correlations of SST deconvolved | Ctrl: 6 mice, 2,180 pairs w/out VIP: 4 mice, 447 pairs | linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) |
βstate = −0.011 βexp = −0.027 βstate*exp = 0.099 |
−1.424 −0.640 5.322 |
[−0.026, 0.004] [−0.112, 0.057] [0.062, 0.135] |
0.155 0.522 <0.001a |
S1F, right | noise correlations of PN deconvolved | Ctrl: 5 mice, 1,077 pairs w/out VIP: 6 mice, 2,481 pairs | linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) |
βstate = −0.016 βexp = −0.019 βstate*exp = 0.015 |
−1.671 −2.337 1.336 |
[−0.035, 0.003] [−0.035, −0.003] [−0.007, 0.038] |
0.095 0.020 0.181 |
S1G and S1H, left | noise correlations of SST mean-matched deconvolved | Ctrl: 6 mice, (1,293, 975) (Q, L) pairs w/out VIP: 4 mice, (261, 202) (Q, L) pairs | linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) |
βstate = −0.024 βexp = −0.014 βstate*exp = 0.098 |
−1.476 −0.262 3.176 |
[−0.056, 0.008] [−0.120, 0.092] [0.037, 0.158] |
0.140 0.793 0.0015a |
S1G and S1H, right | noise correlations of PN mean-matched deconvolved | Ctrl: 6 mice, (748, 748) (Q, L) pairs w/out VIP: 6 mice, (1,658, 1786) (Q, L) pairs | linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) |
βstate = −0.017 βexp = −0.015 βstate*exp = 0.011 |
−1.523 −1.508 0.846 |
[−0.039, 0.005] [−0.033, 0.004] [−0.015, 0.038] |
0.128 0.132 0.398 |
S2B | comparison of percentage of visually tuned cells of all visually responsive cells in SST controls and SST with VIP ablated | Ctrl: 6 mice w/out VIP: 4 mice | unpaired t test | N/A | 2.844 | [0.060, 0.577] | 0.022a |
S2D | comparison of percentage of visually tuned cells of all visually responsive cells in PN controls and PN with VIP ablated | Ctrl: 6 mice w/out VIP: 5 mice | unpaired t test | N/A | 1.582 | [−0.052, 0.296] | 0.148 |
S2F, top | comparison of preferred size of visual responses during Q in SST controls and SST with VIP ablated | Ctrl: 6 mice, 86 cells w/out VIP: 4 mice, 30 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | 43.12 | 2.971 | [14.67, 71.57] | 0.004a |
S2F, bottom | comparison of preferred size of visual responses during L in SST controls and SST with VIP ablated | Ctrl: 4 mice, 66 cells w/out VIP: 4 mice, 21 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | 10.74 | 0.605 | [−24.06, 45.54] | 0.547 |
S2H, top | comparison of preferred size of visual responses during Q in PN controls and PN with VIP ablated | Ctrl: 6 mice, 254 cells, w/out VIP: 5 mice, 175 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | 22.70 | 3.040 | [8.07, 38.33] | 0.003a |
S2H, bottom | comparison of preferred size of visual responses during L in PN controls and PN with VIP ablated | Ctrl: 3 mice, 202 cells w/out VIP: 3 mice, 122 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | 1.89 | 0.201 | [−16.49, 20.27] | 0.841 |
S2J, top | comparison of surround suppression indices during Q for all visually responsive (tuned and untuned) SST control and SST with VIP ablated | Ctrl: 6 mice, 134 cells w/out VIP: 4 mice, 69 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −1.305 | −6.101 | [−1.724, −0.885] | <0.001a |
S2J, bottom | comparison of surround suppression indices during L for all visually responsive (tuned and untuned) SST control and SST with VIP ablated | Ctrl: 6 mice, 121 cells w/out VIP: 4 mice, 53 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.651 | −2.752 | [−1.115, −0.187] | 0.007a |
S2L, top | comparison of surround suppression indices during Q for all visually responsive (tuned and untuned) PN control and PN with VIP ablated | Ctrl: 6 mice, 379 cells w/out VIP: 5 mice, 243 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.671 | −6.384 | [−0.877, −0.465] | <0.001a |
S2L, bottom | comparison of surround suppression indices during L for all visually responsive (tuned and untuned) PN control and PN with VIP ablated | Ctrl: 6 mice, 479 cells w/out VIP: 5 mice, 234 cells | zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) | −0.459 | −4.229 | [−0.672, −0.247] | <0.001a |
S3F | comparison of modulation indices in response to various light intensities | 1 mouse, 84 units | Friedman’s ANOVA and post-hoc Wilcoxon signed rank test | N/A | N/A | N/A | pLOW-MED < 0.001a pMED-HIGH < 0.001a pLOW-HIGH < 0.001a |
S3H | comparison of run probability in saline-injected and GtACR2-injected mice | saline: 7 mice GtACR2: 8 mice | linear mixed-effects model | 0.068 | 0.742 | [−0.114, 0.250] 0.460 | |
S3I, left | comparison of shift for saline- injected and GtACR2-injected (opto) mice during Q | saline: 7 mice GtACR2: 8 mice | unpaired t test | N/A | 3.615 | [0.276, 1.094] | 0.003a |
S3I, right | comparison of shift for saline-injected and GtACR2-injected (opto) mice during L | saline: 7 mice GtACR2: 8 mice | unpaired t test | N/A | 1.263 | [−0.239, 0.913] | 0.229 |
S3J, left | comparison of for light-stimulation-on trials and light-off trials in GtACR2 mice for 100° stimuli | GtACR2: 8 mice | paired t test | N/A | −5.394 | [−0.675, −0.263] | 0.001a |
S3J, right | comparison of for light-stimulation-on trials and light-off trials in GtACR2 mice for 20° stimuli | GtACR2: 3 mice | paired t test | N/A | −7.273 | [−2.189, −0.562] | 0.018a |
S3K, left | Comparison of for light-stimulation-on trials and light-off trials in saline mice for 100° stimuli | saline: 7 mice | paired t test | N/A | 0.944 | [−0.181, 0.407] | 0.382 |
S3K, right | comparison of for light-stimulation-on trials and light-off trials in saline mice for 20° stimuli | saline: 4 mice | paired t test | N/A | 0.072 | [−1.001, 1.048] | 0.947 |
S3N | comparison of run probability in saline-injected and VIP-ablated mice | Ctrl (saline): 14 mice w/out VIP: 8 mice | linear mixed-effects model | 0.0319 | 0.729 | [−0.054, 0.118] | 0.467 |
S3O, left | comparison of for saline-injected and VIP-ablated mice during Q | Ctrl (saline): 14 mice w/out VIP: 8 mice | unpaired t test | N/A | −2.231 | [−1.655, −0.056] | 0.037a |
S3O, right | comparison of for saline-injected and VIP-ablated mice during L | Ctrl (saline): 14 mice w/out VIP: 8 mice | unpaired t test | N/A | −1.403 | [−2.054, 0.402] | 0.176 |
S3P | comparison of lick probability for lowest contrast stimuli in saline-injected and VIP-ablated mice | Ctrl (saline): 14 mice w/out VIP: 8 mice | unpaired t test | N/A | 1.663 | [−0.010, 0.095] | 0.109 |
Ctrl, control; w/out, without; FoV, field of vision.
p < 0.05