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. Author manuscript; available in PMC: 2023 Nov 1.
Published in final edited form as: Cell Rep. 2023 Sep 8;42(9):113088. doi: 10.1016/j.celrep.2023.113088

Summary of all statistical tests

Figure Comparison N Test Estimate t stat CI p value
1F comparison of locomotion modulation indices for SST control and SST with VIP ablated Ctrl: 7 mice, 600 cells w/out VIP: 5 mice, 277 cells linear mixed-effects model y~experimenttype+(1|mouse:FoV) 0.140 2.566 [0.033, 0.247] 0.010a
1I comparison of locomotion modulation indices for PN control and PN with VIP ablated Ctrl: 6 mice, 1,679 cells w/out VIP: 6 mice, 1,585 cells linear mixed-effects model y~experimenttype+(1|mouse:FoV) 0.048 1.726 [−0.007, 0.104] 0.084
2D, top comparison of surround suppression indices during quiescence (Q) for SST control and SST with VIP ablated Ctrl: 6 mice, 86 cells w/out VIP: 4 mice, 30 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.930 −3.620 [−1.439, −0.422] <0.001a
2D, bottom comparison of surround suppression indices during locomotion (L) for SST control and SST with VIP ablated Ctrl: 6 mice, 101 cells w/out VIP: 4 mice, 36 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.217 −0.909 [−0.684, 0.250] 0.366
2F, top comparison of surround suppression indices during Q for PN control and PN with VIP ablated Ctrl: 6 mice, 279 cells w/out VIP: 5 mice, 175 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.545 −4.288 [−0.795, −0.295] <0.001a
2F, bottom comparison of surround suppression indices during L for PN control and PN with VIP ablated Ctrl: 6 mice, 314 cells w/out VIP: 5 mice, 165 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.423 −2.775 [−0.724, −0.123] 0.006a
3E, left comparison of false alarm rates for saline-injected mice during light-stimulation-on trials and light-off trials 7 mice paired t test N/A N/A [−0.063, 0.052] 0.812
3E, right comparison of false alarm rates for GtACR2-injected mice during light-stimulation-on trials and light-off trials 8 mice paired t test N/A N/A [−0.019, 0.040] 0.444
3F, left comparison of C50 shift for saline-injected and GtACR2-injected (opto) mice for 100° stimuli saline: 7 mice; GtACR2: 8 mice unpaired t test N/A N/A [0.268, 0.897] 0.002a
3F, right comparison of C50 shift for saline-injected and GtACR2-injected (opto) mice for 20° stimuli saline: 4 mice; GtACR2: 3 mice unpaired t test N/A N/A [0.338, 2.459] 0.019
S1C, left comparison of VIP cell density in control and VIP-ablated mice 10 days post-injection saline: 3 mice; caspase: 3 mice unpaired t test N/A N/A [−51.53, 175.52] 0.204
S1C, middle comparison of VIP cell density in control and VIP-ablated mice 14 days post-injection saline: 3 mice; caspase: 3 mice unpaired t test N/A N/A [76.07, 283.96] 0.009a
S1C, right comparison of VIP cell density in control and VIP-ablated mice 21 days post-injection saline: 3 mice; caspase: 3 mice unpaired t test N/A N/A [148.66, 275.64] <0.001a
S1D comparison of VIP cell density in behavioral control mice and behavioral VIP-ablated mice saline: 4 mice; caspase: 4 mice unpaired t test N/A N/A [151.21, 309.09] <0.001a
S1E, left noise correlations of SST ΔF/F0 Ctrl: 6 mice, 2,180 cell pairs w/out VIP: 4 mice, 447 cell pairs linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) βstate = 0.045
βexp = −0.031
βstate*exp = 0.071
4.282
−0.580
2.812
[0.024, 0.065]
[−0.135, 0.073]
[0.022, 0.121]
<0.001a
0.562
0.005a
S1E, right noise correlations of PN ΔF/F0 Ctrl: 5 mice, 1,077 cell pairs w/out VIP: 6 mice, 2,481 cell pairs linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) βstate = 0.007
βexp = 0.023
βstate*exp = 0.024
0.569 1.130
1.763
[−0.016, 0.029]
[−0.017, 0.064]
[−0.003, 0.051]
0.569
0.259
0.078
S1F, left noise correlations of SST deconvolved ΔF/F0 Ctrl: 6 mice, 2,180 pairs w/out VIP: 4 mice, 447 pairs linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) βstate = −0.011
βexp = −0.027
βstate*exp = 0.099
−1.424
−0.640
5.322
[−0.026, 0.004]
[−0.112, 0.057]
[0.062, 0.135]
0.155
0.522
<0.001a
S1F, right noise correlations of PN deconvolved ΔF/F0 Ctrl: 5 mice, 1,077 pairs w/out VIP: 6 mice, 2,481 pairs linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) βstate = −0.016
βexp = −0.019
βstate*exp = 0.015
−1.671
−2.337
1.336
[−0.035, 0.003]
[−0.035, −0.003]
[−0.007, 0.038]
0.095
0.020
0.181
S1G and S1H, left noise correlations of SST mean-matched deconvolved ΔF/F0 Ctrl: 6 mice, (1,293, 975) (Q, L) pairs w/out VIP: 4 mice, (261, 202) (Q, L) pairs linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) βstate = −0.024
βexp = −0.014
βstate*exp = 0.098
−1.476
−0.262
3.176
[−0.056, 0.008]
[−0.120, 0.092]
[0.037, 0.158]
0.140
0.793
0.0015a
S1G and S1H, right noise correlations of PN mean-matched deconvolved ΔF/F0 Ctrl: 6 mice, (748, 748) (Q, L) pairs w/out VIP: 6 mice, (1,658, 1786) (Q, L) pairs linear mixed-effects model y ~ 1 + state*experiment type + (1 | mouse:FoV) βstate = −0.017
βexp = −0.015
βstate*exp = 0.011
−1.523
−1.508
0.846
[−0.039, 0.005]
[−0.033, 0.004]
[−0.015, 0.038]
0.128
0.132
0.398
S2B comparison of percentage of visually tuned cells of all visually responsive cells in SST controls and SST with VIP ablated Ctrl: 6 mice w/out VIP: 4 mice unpaired t test N/A 2.844 [0.060, 0.577] 0.022a
S2D comparison of percentage of visually tuned cells of all visually responsive cells in PN controls and PN with VIP ablated Ctrl: 6 mice w/out VIP: 5 mice unpaired t test N/A 1.582 [−0.052, 0.296] 0.148
S2F, top comparison of preferred size of visual responses during Q in SST controls and SST with VIP ablated Ctrl: 6 mice, 86 cells w/out VIP: 4 mice, 30 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) 43.12 2.971 [14.67, 71.57] 0.004a
S2F, bottom comparison of preferred size of visual responses during L in SST controls and SST with VIP ablated Ctrl: 4 mice, 66 cells w/out VIP: 4 mice, 21 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) 10.74 0.605 [−24.06, 45.54] 0.547
S2H, top comparison of preferred size of visual responses during Q in PN controls and PN with VIP ablated Ctrl: 6 mice, 254 cells, w/out VIP: 5 mice, 175 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) 22.70 3.040 [8.07, 38.33] 0.003a
S2H, bottom comparison of preferred size of visual responses during L in PN controls and PN with VIP ablated Ctrl: 3 mice, 202 cells w/out VIP: 3 mice, 122 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) 1.89 0.201 [−16.49, 20.27] 0.841
S2J, top comparison of surround suppression indices during Q for all visually responsive (tuned and untuned) SST control and SST with VIP ablated Ctrl: 6 mice, 134 cells w/out VIP: 4 mice, 69 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −1.305 −6.101 [−1.724, −0.885] <0.001a
S2J, bottom comparison of surround suppression indices during L for all visually responsive (tuned and untuned) SST control and SST with VIP ablated Ctrl: 6 mice, 121 cells w/out VIP: 4 mice, 53 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.651 −2.752 [−1.115, −0.187] 0.007a
S2L, top comparison of surround suppression indices during Q for all visually responsive (tuned and untuned) PN control and PN with VIP ablated Ctrl: 6 mice, 379 cells w/out VIP: 5 mice, 243 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.671 −6.384 [−0.877, −0.465] <0.001a
S2L, bottom comparison of surround suppression indices during L for all visually responsive (tuned and untuned) PN control and PN with VIP ablated Ctrl: 6 mice, 479 cells w/out VIP: 5 mice, 234 cells zero/one inflated beta mixed-effects regression model (experiment type as fixed effect; mouse with nested FoV as random effects) −0.459 −4.229 [−0.672, −0.247] <0.001a
S3F comparison of modulation indices in response to various light intensities 1 mouse, 84 units Friedman’s ANOVA and post-hoc Wilcoxon signed rank test N/A N/A N/A pLOW-MED < 0.001a
pMED-HIGH < 0.001a
pLOW-HIGH < 0.001a
S3H comparison of run probability in saline-injected and GtACR2-injected mice saline: 7 mice GtACR2: 8 mice linear mixed-effects model y~experimenttype+(1|mouse:FoV) 0.068 0.742 [−0.114, 0.250] 0.460
S3I, left comparison of C50 shift for saline- injected and GtACR2-injected (opto) mice during Q saline: 7 mice GtACR2: 8 mice unpaired t test N/A 3.615 [0.276, 1.094] 0.003a
S3I, right comparison of C50 shift for saline-injected and GtACR2-injected (opto) mice during L saline: 7 mice GtACR2: 8 mice unpaired t test N/A 1.263 [−0.239, 0.913] 0.229
S3J, left comparison of C50 for light-stimulation-on trials and light-off trials in GtACR2 mice for 100° stimuli GtACR2: 8 mice paired t test N/A −5.394 [−0.675, −0.263] 0.001a
S3J, right comparison of C50 for light-stimulation-on trials and light-off trials in GtACR2 mice for 20° stimuli GtACR2: 3 mice paired t test N/A −7.273 [−2.189, −0.562] 0.018a
S3K, left Comparison of C50 for light-stimulation-on trials and light-off trials in saline mice for 100° stimuli saline: 7 mice paired t test N/A 0.944 [−0.181, 0.407] 0.382
S3K, right comparison of C50 for light-stimulation-on trials and light-off trials in saline mice for 20° stimuli saline: 4 mice paired t test N/A 0.072 [−1.001, 1.048] 0.947
S3N comparison of run probability in saline-injected and VIP-ablated mice Ctrl (saline): 14 mice w/out VIP: 8 mice linear mixed-effects model y~experimenttype+(1|mouse:FoV) 0.0319 0.729 [−0.054, 0.118] 0.467
S3O, left comparison of C50 for saline-injected and VIP-ablated mice during Q Ctrl (saline): 14 mice w/out VIP: 8 mice unpaired t test N/A −2.231 [−1.655, −0.056] 0.037a
S3O, right comparison of C50 for saline-injected and VIP-ablated mice during L Ctrl (saline): 14 mice w/out VIP: 8 mice unpaired t test N/A −1.403 [−2.054, 0.402] 0.176
S3P comparison of lick probability for lowest contrast stimuli in saline-injected and VIP-ablated mice Ctrl (saline): 14 mice w/out VIP: 8 mice unpaired t test N/A 1.663 [−0.010, 0.095] 0.109

Ctrl, control; w/out, without; FoV, field of vision.

a

p < 0.05