VIP interneurons regulate cortical size tuning and visual perception

. Author manuscript; available in PMC: 2023 Nov 1.

Published in final edited form as: Cell Rep. 2023 Sep 8;42(9):113088. doi: 10.1016/j.celrep.2023.113088

KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Bacterial and virus strains

AAVdj-ef1a-fDIO-GCaMP6m	plasmid gift of K. Deisseroth lab, Stanford	N/A
AAV5-Syn-GCaMP6s	Chen et al., 2013⁶⁴	Addgene # 100843
AAV5-Syn-FLEX-GCaMP6s	Chen et al., 2013⁶⁴	Addgene # 100845
AAV5 ef1a-Flex-taCasP3-TEVP	Yang et al., 2013⁴⁶	UNC Vector Core
AAV1-hSyn1-SIO-stGtACR2-FusionRed	Mahn et al., 2018⁵⁴	Addgene #105677

Experimental models: Organisms/strains

Mouse VIP-IRES-Cre^+/0 (C57BL/6J)	Jackson Laboratory	JAX 031628
Mouse Emx1-IRES-Cre^+/0	Jackson Laboratory	JAX 005628
Mouse Sst-IRES-Flp^+/0	Jackson Laboratory	JAX 031629
Mouse Ai9	Jackson Laboratory	JAX 007909
Mouse Sst-IRES-Cre^+/0	Jackson Laboratory	JAX 018973
Mouse Ai148(TIT2L-GC6f-ICL-tTA2)-D	Jackson Laboratory	JAX 030328

Software and algorithms

MATLAB R2022b (with curve fitting toolbox)	Mathworks	https://www.mathworks.com/
ImageJ Moco Algorithm	Dubbs et al., 2016⁶⁵	https://github.com/NTCColumbia/moco
R (v. 2022.7.2.576)	R Core Team (2022)	https://www.R-project.org/
MATLAB psignifit toolbox	Frund et al., 2011⁶⁶	https://github.com/wichmann-lab/psignifit
R GAMLSS package	Rigby and Stasinopoulos, 2005⁶⁷	https://cran.r-project.org/web/packages/gamlss/index.html
Custom code	This paper	https://github.com/cardin-higley-lab/Ferguson_et_al_2023 https://doi.org/10.5281/zenodo.8205650