Table 2.
Pneumococcal isolates included in this study
Isolate | Serotype | Year | Country | ST | CC | Genome accession no.b |
---|---|---|---|---|---|---|
7A/2 | 7A | 1937 | Denmark | 191 | 191 | ERR025824 |
14/3 | 14 | 1939 | Denmark | 875 | 1106 | ERR026719 |
17 F/2 | 17 F | 1939 | Denmark | 123 | 113 | ERR026724 |
18C/2 | 18C | 1939 | Denmark | 4706 | 113 | ERR026186 |
22A/2 | 22A | 1939 | Denmark | 7181 | 490 | ERR025822 |
18B/2 | 18B | 1941 | Denmark | 4706 | 113 | ERR026193 |
35C/2 | 35C | 1941 | Denmark | 7196 | 113 | ERR026192 |
2/3 | 2 | 1943 | Denmark | 3744 | 490 | ERR026715 |
35C/3 | 35C | 1943 | Denmark | 5989 | 113 | ERR025823 |
23A/2 | 23A | 1945 | Denmark | 439 | 439 | ERR025821 |
7B/2 | 7B | 1952 | USA | 7180 | 66 | ERR025825 |
7 F/2 | 7 F | 1952 | USA | 7210 | 218 | ERR026172 |
9 L/2 | 9 L | 1952 | USA | 5979 | 124 | ERR026178 |
9 N/2 | 9 N | 1952 | USA | 7205 | None3782 | ERR026179 |
14/2 | 14 | 1952 | USA | 124 | 124 | ERR025830 |
17 F/1 | 17 F | 1952 | USA | 574 | 574 | ERR025831 |
19 F/8 | 19 F | 1952 | Denmark | 7229 | 4399 | ERR026190 |
2/2 | 2 | 1956 | USA | 574 | 574 | ERR025820 |
10 F/2 | 10 F | 1956 | USA | 7186 | 490 | ERR025828 |
11C/1 | 11C | 1957 | USA | 7201 | 124 | ERR025829 |
9 N/6 | 9 N | 1960 | Denmark | 71 | 66 | ERR026180 |
12 F/3 | 12 F | 1961 | Denmark | 7228 | 4399 | ERR026195 |
14/4 | 14 | 1961 | Denmark | 134 | 124 | ERR026188 |
18 F/1 | 18 F | 1961 | USA | 7182 | 490 | ERR026173 |
7 F/3 | 7 F | 1962 | Denmark | 191 | 191 | ERR026176 |
9A/1 | 9A | 1962 | USA | 312 | 156/162 | ERR025826 |
12 F/2 | 12 F | 1962 | USA | 7194 | Singleton7194 | ERR026183 |
17 F/3 | 17 F | 1962 | Denmark | 392 | 392 | ERR026725 |
17 F/4 | 17 F | 1962 | Denmark | 392 | 392 | ERR026726 |
19 F/5 | 19 F | 1962 | Denmark | 7229 | 4399 | ERR026717 |
19 F/10 | 19 F | 1963 | Denmark | 7230 | Singleton7230 | ERR026174 |
14/5a | 14 | 1967 | Denmark | 15 | 15 | ERR026720 |
23 F/4 | 23 F | 1967 | Australia | 7184 | Singleton7184 | ERR026191 |
9 V/4 | 9 V | 1968 | Denmark | 123 | 113 | ERR025827 |
18C/3a | 18C | 1968 | Denmark | 7195 | 113 | ERR026716 |
PN2 | 4 | 1969 | PNG | 7152 | Singleton7152 | ERR163220 |
19 F/11 | 19 F | 1972 | Denmark | 71 | 66 | ERR026175 |
PN1a | 6 | 1972 | PNG | 7151 | 277 | ERR163219 |
PNG Papua New Guinea, ST Sequence Type, CC Clonal Complex
a Isolates that possess the mobile elements discussed in this manuscript and are depicted in Figure 1
b.European Nucleotide Archive accession number