Table 3.
Comparison of variable sites among plastid genomes, IGS, CDS, each HVR, and universal DNA barcodes in Roscoea species.
| No. sites | No. variable sites | No. parsimony information sites | No. mutations | No. InDels | Nucleotide diversity (Pi) | |
|---|---|---|---|---|---|---|
| Genome | 167,805 | 1255 | 1212 | 1264 | 4096 | 0.00249 |
| IGS | 53,939 | 728 | 710 | 736 | 3758 | 0.00500 |
| CDS | 82,554 | 369 | 379 | 370 | 367 | 0.00141 |
| atpH-atpI | 1370 | 40 | 39 | 41 | 141 | 0.01484 |
| trnS-GCU | 88 | 1 | 1 | 1 | 0 | 0.00346 |
| ndhF | 2218 | 21 | 20 | 21 | 11 | 0.00289 |
| petA-psbJ | 900 | 39 | 39 | 40 | 70 | 0.01402 |
| psaC-ndhE | 844 | 24 | 24 | 25 | 146 | 0.01246 |
| psbB-psbT | 204 | 6 | 5 | 6 | 28 | 0.00918 |
| rpl32-trnL-UAG | 1116 | 40 | 40 | 40 | 92 | 0.02138 |
| trnS-GCU-trnG-GCC | 976 | 23 | 23 | 24 | 172 | 0.01089 |
| ycf1 | 5502 | 45 | 43 | 45 | 60 | 0.00279 |
| ITS | 568 | 33 | 25 | 33 | 3 | 0.01445 |
| matK | 1524 | 18 | 13 | 19 | 24 | 0.00305 |
| rbcL | 1462 | 2 | 2 | 2 | 0 | 0.00055 |
| trnH-psbA | 657 | 6 | 6 | 6 | 43 | 0.00268 |