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Genotype and sex influence intestinal beta diversity in a niche-specific manner. Euclidean (clr-transformed SV abundance) and unweighted UniFrac (phylogenetic) distances revealed hpg genotype and sex differences in microbial communities of the small intestine and cecum. Genotype differences within wild-type and hpg mutant mice for A duodenal, C ileum and E cecal samples. Sex differences within male and female mice for B duodenal, D ileum and F cecum samples
