Figure 3.

Prediction accuracy (r) based on standard single-nucleotide polymorphisms (SNPs), failed SNP calls (failed), failed SNP calls filtered by pool specificity (failed PS), and failed SNP calls filtered by LD (failed LD) as well as their combination with GBLUP (light blue), Bayesian Lasso (dark blue), EGBLUP (light green), RKHS (dark green), SVM (pink), and XGB (red). In canola seed yield (A), maize Dent dry matter yield (B) and maize Flint dry matter yield (C). Values above the boxplots represent median values across all cross-validation runs.