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. Author manuscript; available in PMC: 2024 Oct 19.
Published in final edited form as: Mol Cell. 2023 Oct 12;83(20):3692–3706.e5. doi: 10.1016/j.molcel.2023.09.024

Key Resource Table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit Anti-MBP GeneTex GTX124267
Mouse Anti-HA GeneTex GTX628489
IRDye680 Goat Anti Rabbit LI-COR 926-68071
IRDye800 Goat Anti Mouse LI-COR 926-32210
Bacterial and virus strains
BL21-AI E. coli Invitrogen Cat# C607003
HEK 293 Freestyle Thermo Fisher Cat# R79007
Chemicals, peptides, and recombinant proteins
L-Arabinose GoldBio A-300-25
Lipofectamine 2000 Transfection Reagent Thermo Fisher 11668019
Recombinant CtSen1FL (full length) This paper N/A
Recombinant CtSen1N-PP-C (1-900-PreScission-PreScission-1080-1868) This paper N/A
Recombinant CtSen1Sen1N (1-900) This paper N/A
Recombinant CtSen1Hel (1087-1890) This paper N/A
Recombinant CtSen1HelΔLZZ (1087(Δ1457-1525)-1890) This paper N/A
Recombinant CtSen1Hel-1878 (1087-1878) This paper N/A
Recombinant CtSen1Hel mutants (L1203S and L1551W) This paper N/A
Critical commercial assays
QuickChange Site-Directed Mutagenesis Kit Agilent 200519
Q5 Mutagenesis Kit NEB E0552S
Malachite Green Phosphate Assay Kit Cayman 10009325
Deposited data
CtSen1FL, cryo-EM map and refined coordinates This paper EMD: 29439, PDB: 8FTK
CtSen1Sen1N, cryo-EM map This paper EMD: 29440
CtSen1N-PP-C, cryo-EM map and refined coordinates This paper EMD: 29426, PDB: 8FTH
CtSen1Hel-RNA-ADP-SO4, X-ray data and refined coordinates This paper PDB: 8FTM
Uncropped gels, Mendeley data This paper doi:10.17632/djm6wdc5tg.1
Oligonucleotides
CtSen1Hel L1203S-fwd (AGTAAGGATCGCGGTAGTACCGAAGGCGACATC) This paper N/A
CtSen1Hel L1203S-rev (GATGTCGCCTTCGGTACTACCGCGATCCTTACT) This paper N/A
CtSen1Hel L1551W-fwd (GTTCTGTGTGCCACGTGGAGTGGCAGCGGCCAC) This paper N/A
CtSen1Hel L1551W-rev (GTGGCCGCTGCCACTCCACGTGGCACACAGAAC) This paper N/A
CtSen1Hel-1878-fwd (GTGGAAATGCACGACTAATGACGTACGAGTGAA) This paper N/A
CtSen1Hel-1878-rev (TTCACTCGTACGTCATTAGTCGTGCATTTCCAC) This paper N/A
CtSen1Hel-cHA-fwd (GCCGGATTATGCGTAATGAAAGGGTGGGCGCGC) This paper N/A
CtSen1Hel-cHA-rev (ACATCATACGGATATGGCATCGCCGGCGGGAT) This paper N/A
Substrate oligos for RNA-DNA unwinding assays Supplementary Table 3 N/A
Substrate oligos for ATPase assays Supplementary Table 2 N/A
Substrate oligos for EMSAs Supplementary Table 3 N/A
Substrate RNAs for crystallization Supplementary Table 2 N/A
Substrate RNA for fluorescence polarization RNA binding Supplementary Table 2 N/A
Recombinant DNA
CtSen1FL (full length) This paper N/A
CtSen1N-PP-C (1-900-PreScission-PreScission-1080-1868) This paper N/A
CtSen1Sen1N (1-900) This paper N/A
CtSen1Hel (1087-1890) This paper N/A
CtSen1HelΔLZZ (1087(Δ1457-1525)-1890) This paper N/A
CtSen1Hel-1878 (1087-1878) This paper N/A
CtSen1Hel mutants (L1203S and L1551W) This paper N/A
Software and algorithms
PHENIX Adams et al.47 N/A
Coot Emsley and Cowtan45 N/A
HKL-2000 HKL Research Inc. N/A
PyMOL Schrödinger N/A
Prism 8.0 GraphPad N/A
TOPAZ Bepler et al.44 N/A
Emperia Imaging Software LI-COR N/A
AlphaFold Senior et al.46 N/A
CryoSparc v2.7 Punjani et al.42 and Punjani et al.43 N/A
MotionCorr2 Zheng et al.41 N/A
Smartscope Bouvette et al.48 N/A