Antibodies
|
Rabbit Anti-MBP |
GeneTex |
GTX124267 |
Mouse Anti-HA |
GeneTex |
GTX628489 |
IRDye680 Goat Anti Rabbit |
LI-COR |
926-68071 |
IRDye800 Goat Anti Mouse |
LI-COR |
926-32210 |
Bacterial and virus strains
|
BL21-AI E. coli
|
Invitrogen |
Cat# C607003 |
HEK 293 Freestyle |
Thermo Fisher |
Cat# R79007
|
Chemicals, peptides, and recombinant proteins
|
L-Arabinose |
GoldBio |
A-300-25 |
Lipofectamine ™ 2000 Transfection Reagent |
Thermo Fisher |
11668019 |
Recombinant CtSen1FL (full length) |
This paper |
N/A |
Recombinant CtSen1N-PP-C (1-900-PreScission-PreScission-1080-1868) |
This paper |
N/A |
Recombinant CtSen1Sen1N (1-900) |
This paper |
N/A |
Recombinant CtSen1Hel (1087-1890) |
This paper |
N/A |
Recombinant CtSen1HelΔLZZ (1087(Δ1457-1525)-1890) |
This paper |
N/A |
Recombinant CtSen1Hel-1878 (1087-1878) |
This paper |
N/A |
Recombinant CtSen1Hel mutants (L1203S and L1551W) |
This paper |
N/A |
Critical commercial assays
|
QuickChange Site-Directed Mutagenesis Kit |
Agilent |
200519 |
Q5 Mutagenesis Kit |
NEB |
E0552S |
Malachite Green Phosphate Assay Kit |
Cayman |
10009325 |
Deposited data
|
CtSen1FL, cryo-EM map and refined coordinates |
This paper |
EMD: 29439, PDB: 8FTK |
CtSen1Sen1N, cryo-EM map |
This paper |
EMD: 29440 |
CtSen1N-PP-C, cryo-EM map and refined coordinates |
This paper |
EMD: 29426, PDB: 8FTH |
CtSen1Hel-RNA-ADP-SO4, X-ray data and refined coordinates |
This paper |
PDB: 8FTM |
Uncropped gels, Mendeley data |
This paper |
doi:10.17632/djm6wdc5tg.1
|
Oligonucleotides
|
CtSen1Hel L1203S-fwd (AGTAAGGATCGCGGTAGTACCGAAGGCGACATC) |
This paper |
N/A |
CtSen1Hel L1203S-rev (GATGTCGCCTTCGGTACTACCGCGATCCTTACT) |
This paper |
N/A |
CtSen1Hel L1551W-fwd (GTTCTGTGTGCCACGTGGAGTGGCAGCGGCCAC) |
This paper |
N/A |
CtSen1Hel L1551W-rev (GTGGCCGCTGCCACTCCACGTGGCACACAGAAC) |
This paper |
N/A |
CtSen1Hel-1878-fwd (GTGGAAATGCACGACTAATGACGTACGAGTGAA) |
This paper |
N/A |
CtSen1Hel-1878-rev (TTCACTCGTACGTCATTAGTCGTGCATTTCCAC) |
This paper |
N/A |
CtSen1Hel-cHA-fwd (GCCGGATTATGCGTAATGAAAGGGTGGGCGCGC) |
This paper |
N/A |
CtSen1Hel-cHA-rev (ACATCATACGGATATGGCATCGCCGGCGGGAT) |
This paper |
N/A |
Substrate oligos for RNA-DNA unwinding assays |
Supplementary Table 3
|
N/A |
Substrate oligos for ATPase assays |
Supplementary Table 2
|
N/A |
Substrate oligos for EMSAs |
Supplementary Table 3
|
N/A |
Substrate RNAs for crystallization |
Supplementary Table 2
|
N/A |
Substrate RNA for fluorescence polarization RNA binding |
Supplementary Table 2
|
N/A |
Recombinant DNA
|
CtSen1FL (full length) |
This paper |
N/A |
CtSen1N-PP-C (1-900-PreScission-PreScission-1080-1868) |
This paper |
N/A |
CtSen1Sen1N (1-900) |
This paper |
N/A |
CtSen1Hel (1087-1890) |
This paper |
N/A |
CtSen1HelΔLZZ (1087(Δ1457-1525)-1890) |
This paper |
N/A |
CtSen1Hel-1878 (1087-1878) |
This paper |
N/A |
CtSen1Hel mutants (L1203S and L1551W) |
This paper |
N/A |
Software and algorithms
|
PHENIX |
Adams et al.47
|
N/A |
Coot |
Emsley and Cowtan45
|
N/A |
HKL-2000 |
HKL Research Inc. |
N/A |
PyMOL |
Schrödinger |
N/A |
Prism 8.0 |
GraphPad |
N/A |
TOPAZ |
Bepler et al.44
|
N/A |
Emperia Imaging Software |
LI-COR |
N/A |
AlphaFold |
Senior et al.46
|
N/A |
CryoSparc v2.7 |
Punjani et al.42 and Punjani et al.43
|
N/A |
MotionCorr2 |
Zheng et al.41
|
N/A |
Smartscope |
Bouvette et al.48
|
N/A |