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. 2023 Nov 7;6:1129. doi: 10.1038/s42003-023-05519-1

Table 1.

List of independent (dimensionless) parameters involved in our theory.

Parameter Meaning Estimate Value Ref
ζ Rescaled pre-rRNA surface density <0.12 Varied 16
γpb2NrkBT Rescaled surface tension per RBP 0.03 0.03
χ Interaction parameter >10 12
ϵ RBP-RNA-binding energy <−10 −12
μp/(kBT) RBP chemical potential −10 −10 13

The unit length b of pre-rRNA is estimated as 4 nm (≈12 b) by using the value of single-stranded DNA (23). The absolute temperature T is 300 K. The surface density σin was estimated by the number of Pol I (50 Pol I per rDNA, 300 copies of active rDNA repeat per cell, ~10 FCs per nucleolus, ~2 nucleoli per cell) and the typical radius of FCs rin~100nm (3,16). The surface tension γp can be estimated as ~kBT/bp2 (27,28), where the size bp of FBL is ≈4 nm (29). The number of units Nr in the FBL-binding region of pre-rRNA is estimated by using its length ∼400 b (2,16). The chemical potential of FBL was estimated by using its concentration ~1 μM (13).