Table 1.
Parameter | Meaning | Estimate | Value | Ref |
---|---|---|---|---|
ζ | Rescaled pre-rRNA surface density | <0.12 | Varied | 16 |
Rescaled surface tension per RBP | 0.03 | 0.03 | ||
χ | Interaction parameter | >10 | 12 | |
ϵ | RBP-RNA-binding energy | <−10 | −12 | |
RBP chemical potential | −10 | −10 | 13 |
The unit length b of pre-rRNA is estimated as 4 nm (≈12 b) by using the value of single-stranded DNA (23). The absolute temperature T is 300 K. The surface density was estimated by the number of Pol I (50 Pol I per rDNA, 300 copies of active rDNA repeat per cell, ~10 FCs per nucleolus, ~2 nucleoli per cell) and the typical radius of FCs (3,16). The surface tension can be estimated as (27,28), where the size of FBL is ≈4 nm (29). The number of units in the FBL-binding region of pre-rRNA is estimated by using its length ∼400 b (2,16). The chemical potential of FBL was estimated by using its concentration ~1 μM (13).