Table 2.
Annotation of Full eccDNA in cell lines. The number of detected Full eccDNA, annotated Full eccDNAs which overlap with gene region and Full eccDNAs contain full gene in seven cell lines respectively
| BGC823 | SGC7901 | GES1 | HepG2 | HL7702 | MB453 | MCF12A | |
|---|---|---|---|---|---|---|---|
| Phenotype | GC | GC | GE | HCC | Liver | BC | BE |
| Full eccDNA | 3625 | 3651 | 4170 | 4490 | 2356 | 17 388 | 323 |
| Annotated Full eccDNA | 2486 | 2591 | 2892 | 3065 | 1751 | 11 566 | 236 |
| Annotated gene | 1970 | 2035 | 2317 | 2551 | 1510 | 6941 | 232 |
| Full eccDNA with full gene | 82 | 58 | 117 | 102 | 44 | 277 | 14 |
| Full eccDNA with full enhancer | 1315 | 1352 | 1732 | 1605 | 926 | 5748 | 171 |
Note: GC: gastric cancer; GE: gastric epithelial cells; HCC: hepatocellular carcinoma; BC: breast cancer; BE: breast epithelial cells.