Table 4. Top differentially expressed genes.
| Regulation | Ensembl ID | log2 Fold Change | Adj.Pval | Symbol | Chr | Type | #0006_Primary | #0006_Met | #0007_Primary | #0007_Met | #0008_Primary | #0008_Met | #0009_Primary | #0009_Met | #0018_Primary | #0018_Met |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Up | ENSG00000249631 | 5.004112931 | 2.98E-03 | 4p15.33 | IncRNA | 2.808146768 | 5.910458486 | 2.256831517 | 4.787822064 | 2.208600152 | 6.275193112 | 2.152317068 | 3.849774557 | 2 | 3.410960355 | |
| Up | ENSG00000255693 | 4.988902949 | 8.03E-02 | LINC02389 | 12q14.3 | IncRNA | 3.000923778 | 4.892153345 | 2.256831517 | 2.478945215 | 2.390813802 | 7.749324524 | 2.638550945 | 2.246142115 | 2 | 5.748843171 |
| Up | ENSG00000251152 | 4.523601477 | 9.34E-02 | 4p15.33 | IncRNA | 3.000923778 | 7.492326457 | 2.474776918 | 3.982923261 | 2.208600152 | 7.411787314 | 2.919014773 | 4.498450824 | 3.651237056 | 2 | |
| Up | ENSG00000200834 | 2.737814169 | 6.00E-02 | Y_RNA | 9p13.3 | misc_RNA | 2.585578419 | 5.066166275 | 2.664077712 | 3.470802033 | 2.95113892 | 4.932045885 | 2.831448134 | 4.944320187 | 3.651237056 | 4.767017838 |
| Up | ENSG00000260955 | 2.274889033 | 6.62E-02 | 8q11.23 | IncRNA | 3.323036558 | 5.221431391 | 3.241206602 | 3.90922402 | 3.062788147 | 5.025200891 | 3.079654245 | 5.012423927 | 3.049989149 | 4.475769259 | |
| Up | ENSG00000242986 | 1.848200194 | 1.31E-02 | RPL21P99 | 12p11.22 | processed_pseudogene | 5.359218883 | 6.041299761 | 4.733505776 | 6.115995297 | 4.616755478 | 6.72810925 | 4.35616047 | 6.133957023 | 4.667340679 | 7.077586434 |
| Down | ENSG00000115850 | -11.00672978 | 6.29E-03 | LCT | 2q21.3 | protein_coding | 13.67912559 | 2 | 2.664077712 | 2 | 9.747547114 | 2 | 12.66313063 | 3.607079139 | 2 | 2.50058312 |
| Down | ENSG00000114113 | -10.85396153 | 4.48E-02 | RBP2 | 3q23 | protein_coding | 10.21372903 | 2 | 2 | 2 | 8.065230864 | 2 | 12.79664791 | 2.45634636 | 2 | 2.871505065 |
| Down | ENSG00000148942 | -9.950915626 | 2.87E-05 | SLC5A12 | 11p14.2 | protein_coding | 9.710921957 | 2.56153175 | 2.256831517 | 2.259257005 | 7.718307982 | 2 | 11.32681209 | 2.246142115 | 2 | 2 |
| Down | ENSG00000137860 | -9.285099263 | 1.16E-04 | SLC28A2 ENSG00000137860 | 15q21.1 | protein_coding | 6.586732557 | 2 | 4.108517157 | 2.259257005 | 6.102566161 | 2.327727231 | 10.10583006 | 2 | 2 | 2 |
| Down | ENSG00000110244 | -8.522081459 | 2.73E-02 | APOA4 | 11q23.3 | protein_coding | 14.5943037 | 2 | 9.407195823 | 2 | 11.68858384 | 6.004235855 | 14.21106546 | 5.828654339 | 2 | 4.363970817 |
| Down | ENSG00000204978 | -8.482267717 | 6.29E-03 | ERICH4 | 19q13.2 | protein_coding | 5.932463263 | 2 | 2.256831517 | 2 | 7.3785928 | 2 | 8.689606784 | 2.246142115 | 2 | 2 |
| Down | ENSG00000081800 | -8.44153797 | 8.14E-03 | SLC13A1 | 7q32.32 | protein_coding | 6.783139558 | 2 | 2 | 2.259257005 | 5.715254076 | 2 | 9.087036065 | 2.246142115 | 2 | 2 |
| Down | ENSG00000237070 | -7.253199904 | 3.18E-02 | 7p21.2 | IncRNA | 3.323036558 | 2.307915358 | 5.643423062 | 2 | 2.552573002 | 2 | 7.280214099 | 2 | 2 | 2 | |
| Down | ENSG00000172689 | -6.943021898 | 1.29E-02 | MS4A10 | 11q12.2 | protein_coding | 8.753373894 | 3.279474842 | 2 | 2.988637996 | 6.703000403 | 2 | 9.916678007 | 2.246142115 | 2 | 2.50058312 |
| Down | ENSG00000257335 | -6.905894979 | 2.87E-05 | MGAM | 7q34 | protein_coding | 11.69924675 | 3.130659634 | 5.928291766 | 4.51719801 | 9.684575926 | 5.933755997 | 13.38815903 | 4.7182936118 | 5.086376154 | 4.676314515 |
| Down | ENSG00000141434 | -6.864967636 | 8.94E-04 | MEP1B | 18q12.1 | protein_coding | 10.90873372 | 4.181804211 | 5.55051177 | 6.356802554 | 10.80265254 | 4.832045885 | 13.56049296 | 3.849774557 | 2 | 3.620082636 |
| Down | ENSG00000224057 | -6.704746578 | 9.34E-02 | EGFR-AS1 | 7p11.2 | IncRNA | 4.088875439 | 2 | 2.664077712 | 2.259257005 | 3.263093034 | 2 | 6.941633957 | 2 | 2 | 2 |
| Down | ENSG00000108576 | -6.373802454 | 1.13E-02 | SLC6A4 ENSG00000108576 | 17q11.2 | protein_coding | 8.862917994 | 2.307915358 | 2.831396233 | 3.831556257 | 6.737062329 | 2 | 10.38491054 | 3.607079139 | 2 | 2.871505065 |
| Down | ENSG00000196549 | -6.368097476 | 7.75E-05 | MME | 3q25.2 | protein_coding | 11.98234177 | 5.458453109 | 8.657524291 | 6.575070858 | 9.713734749 | 4.483009385 | 13.37581921 | 3.773324275 | 3.651237056 | 5.216564396 |
| Down | ENSG00000107165 | -6.295095692 | 2.98E-03 | TYRP1 | 9p23 | protein_coding | 5.955924188 | 2.307915358 | 2.831396233 | 3.470802033 | 8.824245143 | 3.014454367 | 8.827537465 | 2 | 4.074348836 | 2 |
| Down | ENSG00000181778 | -6.264410935 | 5.51E-02 | TMEM252 | 9q21.11 | protein_coding | 4.80893818 | 2 | 6.342719293 | 3.662425974 | 5.027871338 | 2 | 9.283371766 | 2.246142115 | 2 | 2 |
| Down | ENSG00000130234 | -6.069239584 | 2.00E-03 | ACE2 | Xp22.2 | protein_coding | 7.305580984 | 2.56153175 | 3.355474865 | 3.125104159 | 4.91337553 | 2.594614818 | 9.392570078 | 2.948717924 | 3.049989149 | 2 |
| Down | ENSG00000182156 | -5.981823698 | 1.00E-03 | ENPP7 | 17q25.3 | protein_coding | 9.249762336 | 3.130659634 | 7.874700848 | 2 | 6.68566304 | 3.477803081 | 6.022843075 | 2.639782253 | 2 | 2.50058312 |
| Down | ENSG00000241224 | -5.801523377 | 6.62E-02 | C3orf85 | 3q13.13 | protein_coding | 6.908676034 | 2 | 6.954529268 | 3.831556257 | 5.9069844 | 2 | 9.327047569 | 2 | 2 | 3.410960355 |
| Down | ENSG00000174358 | -5.440433188 | 8.94E-04 | SLC6A19 | 5p15.33 | protein_coding | 10.74077933 | 5.257770368 | 6.328797872 | 5.38534592 | 8.178016908 | 4.483009385 | 11.35382556 | 3.515173157 | 3.651237056 | 3.802694387 |
| Down | ENSG00000162670 | -5.419229547 | 8.78E-02 | BRINP3 | 1q31.1 | protein_coding | 4.955805091 | 2.777159177 | 8.523494902 | 4.980057382 | 3.519439604 | 2 | 8.859708081 | 2 | 8.865616263 | 2 |
| Down | ENSG00000204876 | -5.372532894 | 2.73E-02 | 7q36.3 | IncRNA | 5.674127533 | 2.56153175 | 5.620750157 | 2.988637996 | 5.081882725 | 3.185976506 | 8.414375443 | 2 | 2 | 2 | |
| Down | ENSG00000198074 | -5.219515781 | 2.35E-02 | AKR1B10 | 7q33 | protein_coding | 9.40057972 | 3.130659634 | 7.536066463 | 5.960493133 | 7.953778005 | 5.069703154 | 11.82862207 | 2.802503691 | 2 | 5.150709207 |
| Down | ENSG00000273777 | -5.109157311 | 9.91E-02 | CEACAM20 | 19q13.31 | protein_coding | 6.586732557 | 3.756671754 | 3.739078989 | 2.669558802 | 3.595676995 | 2.594614818 | 8.662903422 | 2.246142115 | 2 | 2 |
| Down | ENSG00000196611 | -5.10807383 | 1.00E-03 | MMP1 | 11q22.2 | protein_coding | 6.024101188 | 3.414364845 | 3.652311288 | 2.988637996 | 8.708838585 | 3.477803081 | 5.775496899 | 2 | 7.588043813 | 2.871505065 |
| Down | ENSG00000135220 | -5.103761317 | 3.93E-03 | UGT2A3 | 4q13.2 | protein_coding | 9.404848084 | 5.998990901 | 9.089869395 | 5.978622305 | 7.170022714 | 3.720415122 | 12.35247694 | 4.872841576 | 3.651237056 | 5.397811389 |
| Down | ENSG00000179674 | -5.054467235 | 4.87E-02 | ARL14 | 3q25.33 | protein_coding | 5.493535983 | 3.414364845 | 5.259042381 | 5.149663601 | 11.61464664 | 5.383536093 | 9.315999926 | 5.465411845 | 5.086376154 | 2 |
| Down | ENSG00000144820 | -4.996451824 | 1.69E-02 | ADGRG7 | 3q12.2 | protein_coding | 7.461236634 | 2.777159177 | 8.845342257 | 4.51719801 | 5.936601016 | 3.339256038 | 10.67240777 | 3.849774557 | 2 | 5.279544245 |
| Down | ENSG00000172782 | -4.458108815 | 6.87E-02 | FADS6 | 17q25.1 | protein_coding | 5.586655643 | 2.307915358 | 6.118321451 | 2.837901775 | 3.865771836 | 3.720415122 | 7.818997991 | 2.246142115 | 2 | 2.50058312 |
| Down | ENSG00000138823 | -4.389308515 | 6.52E-02 | MTTP | 4q23 | protein_coding | 11.64254149 | 7.37316105 | 12.45385497 | 5.084193885 | 9.197371128 | 6.755610669 | 13.49699104 | 7.564433049 | 3.049989149 | 9.031525264 |
| Down | ENSG00000144410 | -4.241040862 | 1.29E-02 | CPO | 2q33.3 | protein_coding | 8.667164698 | 4.981781827 | 5.476677998 | 4.980057382 | 6.976868259 | 4.547365658 | 11.00719495 | 5.920138993 | 5.898855105 | 3.802694387 |
| Down | ENSG00000170482 | -4.133358603 | 4.48E-02 | SLC23A1 | 5q31.2 | protein_coding | 7.716057325 | 4.584065559 | 7.165045527 | 3.125104159 | 5.412119812 | 3.014454367 | 9.271983211 | 3.849774557 | 2 | 4.475769259 |
| Down | ENSG00000119125 | -3.80975681 | 5.14E-02 | GDA | 9q21.13 | protein_coding | 9.365970417 | 5.76655658 | 10.16119653 | 7.661329568 | 8.631721192 | 6.982042643 | 12.52397145 | 5.6042943 | 5.086376154 | 7.380208496 |
| Down | ENSG00000166268 | -3.659510205 | 2.89E-02 | MYRFL | 12q15 | protein_coding | 6.729697766 | 4.265041534 | 6.653152077 | 4.787822064 | 6.737062329 | 3.014454367 | 9.013096455 | 3.99149961 | 3.049989149 | 3.802694387 |
| Down | ENSG00000123496 | -3.634542712 | 3.18E-02 | IL13RA2 | Xq23 | protein_coding | 4.6454078 | 2.96470961 | 5.371960191 | 2.259257005 | 4.541653148 | 2.327727231 | 4.982561565 | 2.802503691 | 3.049989149 | 2 |