Table 1.
The negative regulatory miRNA–mRNA interaction pairs in SH compared with NH under HT stress
| miRNA name | Target transcripts | Gene name | TStart | TStop | TSlice | miRNAs | Target transcripts | ||
|---|---|---|---|---|---|---|---|---|---|
| log2 FC | Regulation | log2 FC | Regulation | ||||||
| ghr-MIR156d-p3 | Ghir_D01G014780.1 | PERK12 | 1778 | 1798 | 1790 | − 1.32 | Down | 5.00 | Up |
| ghr-miR164 | Ghir_A07G023180.1 | Ghir_A07G023180 | 591 | 613 | 603 | 3.02 | Up | − 2.39 | Down |
| ghr-MIR169b-p3_1ss6AG | Ghir_A01G016050.1 | BGAL13 | 1181 | 1203 | 1191 | − 1.69 | Down | 6.32 | Up |
| Ghir_A04G005510.1 | DDB_G0282179 | 598 | 619 | 610 | − 1.69 | Down | 4.58 | Up | |
| ghr-miR390a | Ghir_A11G033170.1 | LIP1 | 1082 | 1102 | 1093 | 0.95 | Up | − 3.55 | Down |
| Ghir_A13G022220.2 | Bp10 | 119 | 138 | 130 | 0.95 | Up | − 2.21 | Down | |
| Ghir_D08G026350.1 | GLOX1 | 1493 | 1514 | 1504 | 2.89 | Up | − 2.74 | Down | |
| ghr-MIR390b-p3 | Ghir_D11G021420.3 | BT4 | 1111 | 1132 | 1123 | 1.00 | Up | − 15.19 | Down |
| ghr-miR7505 | Ghir_A01G016050.1 | BGAL13 | 1857 | 1878 | 1869 | − 0.62 | Down | 6.32 | Up |
| ghr-MIR7508-p3 | Ghir_A03G000550.1 | Ghir_A03G000550 | 1060 | 1083 | 1073 | − 1.26 | Down | 5.92 | Up |
| Ghir_A08G009550.1 | Ghir_A08G009550 | 1030 | 1050 | 1041 | − 1.26 | Down | 16.02 | Up | |
| Ghir_A11G003080.1 | Ghir_A11G003080 | 1155 | 1177 | 1168 | − 1.26 | Down | 4.27 | Up | |
| Ghir_D13G011540.1 | CCR4 | 803 | 828 | 818 | − 1.26 | Down | 4.90 | Up | |
| gra-miR482_L-2R + 2 | Ghir_D11G002690.7 | ORP2A | 168 | 190 | 180 | 1.01 | Up | − 3.25 | Down |
| gra-MIR7494c-p3_2ss17TC20TC | Ghir_A01G007270.1 | Ghir_A01G007270 | 537 | 561 | 550 | − 1.37 | Down | 4.46 | Up |
| Ghir_D05G016260.1 | E6 | 990 | 1012 | 1003 | − 1.37 | Down | 4.84 | Up | |
| gra-MIR8643a-p3 | Ghir_A01G007270.1 | Ghir_A01G007270 | 691 | 711 | 702 | − 1.63 | Down | 4.46 | Up |
| Ghir_D01G007580.1 | Ghir_D01G007580 | 678 | 698 | 689 | − 1.63 | Down | 3.71 | Up | |
| Ghir_D03G003510.1 | RBK1 | 424 | 441 | 432 | − 1.63 | Down | 5.37 | Up | |
| Ghir_D12G025940.1 | OMT | 610 | 631 | 622 | − 1.63 | Down | 3.01 | Up | |
| gra-MIR8741-p3 | Ghir_A03G003770.2 | ABCF1 | 752 | 772 | 763 | − 0.61 | Down | 14.08 | Up |
| lja-miR171d-5p | Ghir_A03G019420.1 | PUMP4 | 796 | 821 | 812 | − 1.81 | Down | 3.33 | Up |
| Ghir_D02G020840.1 | PUMP4 | 607 | 632 | 623 | − 1.81 | Down | 6.17 | Up | |
| mtr-miR159a | Ghir_D05G010040.3 | SE | 2843 | 2862 | 2853 | 3.83 | Up | − 7.05 | Down |
| mtr-miR167a_R + 1 | Ghir_A07G018870.1 | ARF8 | 2856 | 2877 | 2868 | 4.41 | Up | − 6.67 | Down |
| PC-3p-4246_1488 | Ghir_A03G022040.1 | Ghir_A03G022040 | 871 | 894 | 883 | − 0.94 | Down | 3.18 | Up |
| PC-5p-22518_209 | Ghir_A08G021530.1 | Ghir_A08G021530 | 2222 | 2242 | 2233 | − 0.54 | Down | 5.12 | Up |
| PC-5p-27836_155 | Ghir_D05G011000.2 | SKOR | 2235 | 2255 | 2246 | 3.50 | Up | − 6.60 | Down |
| PC-5p-40123_91 | Ghir_D05G038130.1 | Ghir_D05G038130 | 242 | 265 | 256 | − inf | down | 3.46 | Up |
| PC-5p-4140_1526 | Ghir_A01G016050.1 | BGAL13 | 1216 | 1236 | 1227 | − 2.17 | Down | 6.32 | Up |
| Ghir_A08G025450.1 | GLOX1 | 1079 | 1101 | 1090 | − 2.17 | Down | 3.63 | Up | |
| ptc-miR319a | Ghir_A12G004340.3 | SFH3 | 904 | 923 | 913 | 2.33 | Up | − 3.59 | Down |
| tcc-miR167c | Ghir_A13G022250.1 | Bp10 | 429 | 449 | 440 | 1.21 | Up | − 8.57 | Down |
| tcc-miR396c | Ghir_A04G002210.3 | FH5 | 2631 | 2651 | 2642 | 3.00 | Up | − 3.94 | Down |
| tcc-miR396c_L-1 | Ghir_A09G001320.1 | PME31 | 593 | 613 | 604 | inf | Up | − 2.69 | Down |
TStart, TStop and TSlice represent the start site, stop site and cleavage site of the sequence alignment region between the target mRNA and miRNA, respectively