Table 3.
Number of k-mers in genes associated with invasive and carriage isolates, identified with treeWAS. All k-mers had P<0.05 after after Bonferroni adjustment for multiple testing
|
Gene |
No. of associated k-mers |
Association |
|---|---|---|
|
pilE class 1 |
15 |
Carriage |
|
pilE class 2 |
12 |
Invasive |
|
pilS cassette |
29 |
Carriage |
|
mtrD |
4 |
Invasive |
|
tspB |
7 |
Carriage |
|
tbpA (tbp1) |
5 |
Invasive |
|
tbpB (tbp2) |
10 |
Carriage |
|
glmU |
1/1 |
Carriage/invasive |
|
fkbp |
3/3 |
Carriage/invasive |
|
pilC |
2/4 |
Carriage/invasive |