Table 2.
Large-effect quantitative trait nucleotides (QTNs) and QTN-by-environment interactions (QEIs) detected in two genotypic datasets.
| GD | R2 (%) | QTN/QEI | Chr | Pos | Gene ID | Annotation |
|---|---|---|---|---|---|---|
| RGAB | 10.79 | QTN-Lu4-14335180 | 4 | 14335180 | Lus10041466 | TM-CC |
| RGAB | 27.34 | QEI-Lu5-1569144 | 5 | 1569144 | Lus10004719 | TNL |
| RGAB | 16.77 | QTN-Lu5-1715943 | 5 | 1715943 | Lus10008486 | RLK |
| RGAB | 13.34 | QTN-Lu5-15543693 | 5 | 15543693 | Lus10024053 | TM-CC |
| RGAB | 11.88 | QEI-Lu5-15543693 | 5 | 15543693 | Lus10024053 | TM-CC |
| RGAB | 10.07 | QTN-Lu10-11256857 | 10 | 11256857 | Lus10032735 | RLK |
| RGAB | 22.42 | QTN-Lu10-11656889 | 10 | 11656889 | Lus10032759 | NL |
| RGAB | 17.40 | QTN-Lu10-11657307 | 10 | 11657307 | Lus10032759 | NL |
| RGAB | 15.77 | QTN-Lu12-5214501 | 12 | 5214501 | Lus10018309 | TN |
| GB | 13.77 | QTN-Lu14-2333894 | 14 | 2333894 | Lus10025565 | TM-CC |
GD, genotypic dataset: Chr, chromosome: Pos, position: TM-CC, transmembrane coiled-coil protein: TNL, TIR-NBS-LRRs: RLK, receptor-like protein kinase: NL, NBS-LRR. GB, gene-based SNPs: RGAB, resistance gene analog (RGA)-based SNPs.