Source | Number of targets (genes) |
---|---|
bulk RNA-seq DEG, 50 top up/downregulated | 100 |
T-cell related genes | 51 |
KEGG TCR signaling pathway | 35 |
RNA-binding proteins | 27 |
Replogle*: unfolded protein response | 51 |
Replogle: proteasome | 41 |
Replogle: NFkB | 20 |
Replogle: cell cycle | 29 |
Replogle: targets of nonsense-mediated decay | 5 |
Controls (cell cycle, mitochondrial, Cas9) | 15 |
Total number of targets | 374 |
“Replogle” prefix means that this category of targets was derived from the published genome-scale Perturb-seq dataset50.