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. 2023 Nov 10;18(11):e0294249. doi: 10.1371/journal.pone.0294249

Table 1. Primer and shRNA sequences used in the present study.

Primer/shRNA name Primer sequence Enzyme
Primers for qRT-PCR
Human:
BKβ1 sense 5’-CTTCTCCGCACCTCGGGGGA-3’
BKβ1 antisense 5’-CGGTCAGCAGGAAGGTGGGC-3’
Rat:
BKβ1 sense 5′-ACCCATGCCTTTGGGTCAAT-3′
BKβ1 antisense 5′-ATAGAGGCGCTGGTACACAA-3′
GAPDH sense 5′- GCGAAAGCATTTGCCAAGAA-3′
GAPDH antisense 5′-GGCATCGTTTATGGTCGGAAC-3′
shRNA sequences
Human:
shBKβ1 sense 5’-ccggCCACCTGATTGAGACCAACATCTCG
AGATGTTGGTCTCAATCAGGTGGTTTTTg-3’
shBKβ1 antisense 5’-aattcAAAAACCACCTGATTGAGACCAACAT
CTCGAGATGTTGGTCTCAATCAGGTGG-3’
Rat:
shBKβ1 sense 5’-ccggGGACAACTACCAGACAGCCTTCTCG
AGAAGGCTGTCTGGTAGTTGTCCTTTTTg-3’
shBKβ1 antisense 5’-aattcAAAAAGGACAACTACCAGACAGCCTT
CTCGAGAAGGCTGTCTGGTAGTTGTCC-3’
Primers for KCNMB1 promoter construct
(-1,783/+98)KCNMB1 sense 5’-TATAGGTACCatccttggaaaattgctctt-3’ KpnI
(-647/+98)KCNMB1 sense 5’-TATAGGTACCcttcagctcagttggtcc -3’ KpnI
(-296/+98)KCNMB1 sense 5’-TATAGGTACCtttctggcatctttgccag-3’ KpnI
Antisense 5’-ATATAAGCTTtctcccatgtgccgtcctcc-3’ HindIII
Primers for KCNMB1 promoter site-directed mutagenesis
Binding site 1 mutation sense 5’-TGAGAGTGctgtctttcaattTGAGTGGC-3’
Binding site 1 mutation antisense 5’-GCCACTCAaattgaaagacagCACTCTCA-3’
Binding site 2 mutation sense 5’-TTGCTCAGttctgtgacaagtGTAAGTGC-3’
Binding site 2 mutation antisense 5’-GCACTTACacttgtcacagaaCTGAGCAA-3’
Primers used for ChIP in the KCNMB1 promoter
Distant region sense 5’- ATTCAGAGTATCACGAGCAA-3’
Distant region antisense 5’-CCACTCAGAAGCAGGAAA-3’
Binding site 1 sense 5’-GAAAGGGGTGGAGAAGGGC-3’
Binding site 1 antisense 5’-CGAGCTCACCACCTTCCTC-3’
Binding site 2 sense 5’-GAGGTGCCATAACTTGCT-3’
Binding site 2 antisense 5’-CCCTGGCATATCCACGCT-3’

Text in bold indicates the core sequence. ChIP, chromatin immunoprecipitation; sh/shRNA, short hairpin RNA