Table 1. Primer and shRNA sequences used in the present study.
Primer/shRNA name | Primer sequence | Enzyme |
---|---|---|
Primers for qRT-PCR | ||
Human: | ||
BKβ1 sense | 5’-CTTCTCCGCACCTCGGGGGA-3’ | |
BKβ1 antisense | 5’-CGGTCAGCAGGAAGGTGGGC-3’ | |
Rat: | ||
BKβ1 sense | 5′-ACCCATGCCTTTGGGTCAAT-3′ | |
BKβ1 antisense | 5′-ATAGAGGCGCTGGTACACAA-3′ | |
GAPDH sense | 5′- GCGAAAGCATTTGCCAAGAA-3′ | |
GAPDH antisense | 5′-GGCATCGTTTATGGTCGGAAC-3′ | |
shRNA sequences | ||
Human: | ||
shBKβ1 sense |
5’-ccggCCACCTGATTGAGACCAACATCTCG
AGATGTTGGTCTCAATCAGGTGGTTTTTg-3’ |
|
shBKβ1 antisense |
5’-aattcAAAAACCACCTGATTGAGACCAACAT
CTCGAGATGTTGGTCTCAATCAGGTGG-3’ |
|
Rat: | ||
shBKβ1 sense |
5’-ccggGGACAACTACCAGACAGCCTTCTCG
AGAAGGCTGTCTGGTAGTTGTCCTTTTTg-3’ |
|
shBKβ1 antisense |
5’-aattcAAAAAGGACAACTACCAGACAGCCTT
CTCGAGAAGGCTGTCTGGTAGTTGTCC-3’ |
|
Primers for KCNMB1 promoter construct | ||
(-1,783/+98)KCNMB1 sense | 5’-TATAGGTACCatccttggaaaattgctctt-3’ | KpnI |
(-647/+98)KCNMB1 sense | 5’-TATAGGTACCcttcagctcagttggtcc -3’ | KpnI |
(-296/+98)KCNMB1 sense | 5’-TATAGGTACCtttctggcatctttgccag-3’ | KpnI |
Antisense | 5’-ATATAAGCTTtctcccatgtgccgtcctcc-3’ | HindIII |
Primers for KCNMB1 promoter site-directed mutagenesis | ||
Binding site 1 mutation sense | 5’-TGAGAGTGctgtctttcaattTGAGTGGC-3’ | |
Binding site 1 mutation antisense |
5’-GCCACTCAaattgaaagacagCACTCTCA-3’
|
|
Binding site 2 mutation sense |
5’-TTGCTCAGttctgtgacaagtGTAAGTGC-3’
|
|
Binding site 2 mutation antisense |
5’-GCACTTACacttgtcacagaaCTGAGCAA-3’
|
|
Primers used for ChIP in the KCNMB1 promoter | ||
Distant region sense | 5’- ATTCAGAGTATCACGAGCAA-3’ | |
Distant region antisense | 5’-CCACTCAGAAGCAGGAAA-3’ | |
Binding site 1 sense | 5’-GAAAGGGGTGGAGAAGGGC-3’ | |
Binding site 1 antisense | 5’-CGAGCTCACCACCTTCCTC-3’ | |
Binding site 2 sense | 5’-GAGGTGCCATAACTTGCT-3’ | |
Binding site 2 antisense | 5’-CCCTGGCATATCCACGCT-3’ |
Text in bold indicates the core sequence. ChIP, chromatin immunoprecipitation; sh/shRNA, short hairpin RNA