Table 1.
Genotype | Activity | Allelic frequencies (%) |
Associated drug class | |
---|---|---|---|---|
African ancestry | European ancestry | |||
DPD deficient genotypes | Decreased Enzymatic activity |
4-12%16, 18, 77 | 3-5%16, 18, 77 | Fluoropyrimidines (5-FU and Capecitabine) |
TYMS: 2R/2R expression | Decreased TS activity | 28%18 | 23.8%18 | Fluoropyrimidines (5-FU and Capecitabine) |
MMR deficiency | Impaired DNA repair genes | 9.6%78 | 10.4%78 | Pembrolizumab |
MSI | Impaired DNA repair gene | 3.6-12%79–81 | 14%79, 80 | Pembrolizumab |
PALB2 | Impaired DNA repair gene | 6.6 Median TPM12, 13 | 5.5 median TPM12, 13 | PARP-I |
HRD: BRCA 1 mutation | Impaired DNA repair gene | 3.54%82 | 2.15% Non-Ashkenazi 5.6% Ashkenazi82 | PARP-I, Platinums (Oxaliplatin and Cisplatin) |
HRD: BRCA 2 mutation | Impaired DNA repair gene | 4.55%82 | 1.50% Non-Ashkenazi; 3.7% Ashkenazi82 | PARP-I, Platinums (Oxaliplatin and Cisplatin) |
ERCC1 mutation | Impaired DNA repair gene | 73.5 TPM1 12, 13 | 63.8 TPM12, 13 | Platinums |
ERCC2 mutation | Impaired DNA repair gene | 10.1 TPM12, 13 | 14.0 TPM12, 13 | Platinums |
UGT1A1*28 expression | Decreased enzymatic activity | 13-43%21, 83 | 8-39%21, 83 | Irinotecan |
UGT1A1* 93 | Decreased enzymatic activity | 34%21 | 27%21 | Irinotecan |
UGT1A1*6 | Decreased enzymatic activity | 0.1%21 | 1%21 | Irinotecan |
POLA2 2089G>A | Gemcitabine resistance during Knockdown | 18%27, 32 | 18%27 | Gemcitabine |
DCTD 315T>C | Gemcitabine pathway variant | 48%27 | 25%27 | Gemcitabine |
SLC281 1543 G>A | Gemcitabine pathway variant | 9%27 | 2%27 | Gemcitabine |
SLC281 1576 T>C | Gemcitabine pathway variant | 0%27 | 47%27 | Gemcitabine |
SLC282 283A>C | Gemcitabine pathway variant | 8%27 | 34%27 | Gemcitabine |
TYMS 149del (ttaaag) | Gemcitabine pathway variant | 56%27 | 27%27 | Gemcitabine |
SLC 29A1 −1345 C>G | Transporters, increased gene activity in vitro | 8%30, 84 | 0%30, 84 | Gemcitabine |
SLC 29A1 −1050 G>A | Transporter, increased gene activity in vitro | 19%30 | 0%30 | Gemcitabine |
RRM1 −524 T>C | Decreased drug response | 27%30 | 36%30 | Gemcitabine |
CDA −897 C>A | Reduced CDA activity in vivo | 2% together30 | Gemcitabine | |
CDA 79 A>C (Lys27Gln) | Decreased drug response | 4-10.8%30 | 30-36%30 | Gemcitabine, Fluorouracil |
CDA 208 G>A (Ala70Thr) | Decreased CDA activity | 12.5%30 | 0%30 | Gemcitabine, Fluorouracil |
CDA 435 C>T (Thr145Thr) | Lower response rates | 35-36. 7%30, 85 | 30-32.5%30, 85 | Gemcitabine, Fluorouracil |
CYP2C8*3 | Lower Paclitaxel Clearance | 0-238, 39 | 1-13%38, 39 | Nab-Paclitaxel |
CYP2C8*2 | Lower Paclitaxel Clearance | 2%38 | 18%38 | Nab-Paclitaxel |
NTRK genes | Fusion gene, oncogenic | 0.34%63 | 0.28%63 | NTRK fusion inhibitors |
TPM: Transcripts Per Million