Table 2.
Recombination analysis on ToLCNDV genome of ash gourd isolate.
| Viral sequence | Break point positions (in nt) | Putative major parent | Putative minor parent | RDP | GC | BS | MC | CHI | SS | 3Seq |
|---|---|---|---|---|---|---|---|---|---|---|
| DNA-A | 1,521–2,738 (AC1, IR) | JQ897969; ToLCNDV-Tomato | KT426905; ToLCNDV-Ridge gourd | 2.914 × 10−77 | 3.120 × 10−153 | 3.955 × 10−150 | 1.267 × 10−62 | 4.124 × 10−20 | - | 1.154 × 10−12 |
| DNA-B | 1,254–2,370 (BC1, IR) | HM989846; ToLCNDV-Ridge gourd | AY939924; ToLCNDV-Sponge gourd | 1.204 × 10−181 | 1.835 × 10−175 | - | 3.186 × 10−64 | - | 6.895 × 10−89 | 5.107 × 10−13 |
Recombination detection methods abbreviated are GC-GENCONV; BS-BOOTSCAN; MC-MAXCHI; CHI-CHIMERA; SS-SISCAN.