REAGENT or RESOURCE	SOURCE	IDENTIFIER
Biological samples
Endotracheal aspirates, Plasma samples	University of Pittsburgh, Division of Pulmonary, Allergy, Critical Care And Sleep Medicine	Details provided in this manuscript
Critical commercial assays
ELISA – SPD	Biovendor, LLC	Cat# RD194059101
Luminex 10-plex (IL6, IL8, IL10, RAGE, Ang-2, ST2, TNFR1, fractalkine, procalcitonin, pentraxin3)	R&D Systems	Custom made: https://www.rndsystems.com/luminex/analytes
Karius McfDna-Seq	Karius Inc.	N/A
Deposited data
Karius mcfDNA results	Karius Inc.	Github repository: https://github.com/MicrobiomeALIR/Covid_mcfDNA.git
Software and algorithms
R version 3.5.1	The R Foundation for Statistical Computing	N/A
Prism 9	GraphPad	N/A
Other
Primary Code in R language and Datasets	Github	https://github.com/MicrobiomeALIR/Covid_mcfDNA.git
Primary Code in R language and Datasets	Zenodo	https://doi.org/10.5281/zenodo.8319850