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. 2023 Oct 30;66(21):14513–14543. doi: 10.1021/acs.jmedchem.3c00851

Table 4. Physicochemical Properties and Target Degradation Capabilities of BRD4-Targeting PROTACs 43–45 and the HDAC6 Degraders 50 and 51.

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PROTAC elog D7.4a PPB (%)b CHIc log(S)d Target deg (%)e
dBET57 2.7 93 32.3 –5.3 92
MZ1 2.7 92 31.5 –4.9 94
43a 2.1 91 30.4 –4.8 70
43b 2.3 92 30.7 –4.5 85
43c 2.7 94 34.8 n.a.g 80
43d 3.3 95 38.7 n.a. 69
43e 3.8 96 43.9 n.a. 65
43f 2.2 90 29.6 –4.3 81
43g 2.3 90 28.8 –3.9 60
43h 2.5 93 32.4 –5.8 91
43j 3.1 95 36.0 n.a. 83
43k 2.9 95 36.7 n.a. 37
44h 2.4 92 31.6 –5.6 96
45h 2.2 91 30.6 –5.5 83
50 1.0 90 27.5 n.d.f 81
51 0.9 90 28.5 n.d. 87
A6 1.3 91 29.2 n.d. 72
a

Distribution coefficients at pH 7.4 were estimated by an HPLC-based method.

b

Plasma protein binding; experimentally determined percentage of compound bound to human serum albumin.

c

Chromatographic hydrophobicity index values referring to IAM chromatography (CHIIAM values).

d

Logarithm of the solubility measured in mol/L at pH 6.8 by an HPLC-based method.

e

Percentage of degraded target protein (BRD4 after 24 h treatment of MOLT4 cells with 0.1 μM of PROTACs 4345 or HDAC6 after 24 h treatment of MM.1S cells with 0.1 μM of PROTACs 50, 51, or A6). Values are normalized to respective loading controls and to DMSO-treated conditions. BRD4/HDAC6 degradation data represent the average of at least two independent biological experiments.

f

Not determined.

g

Not available (<1 μg/mL).