Table 1.
Samples of group A processed using the SISPA protocol, the SISPA + myBaits® SARS-CoV-2 panel, and the nCoV-2019 sequencing protocol. The total number of raw reads and the number of reads mapped to SARS-CoV-2 reference genome (NC_045512) are shown.
| SISPA protocol |
SISPA + myBaits® |
nCoV-2019 protocol |
|||||
|---|---|---|---|---|---|---|---|
| SAMPLE | Ct value | Total raw reads | SARS-CoV-2 reads | Total raw reads | SARS-CoV-2 reads | Total raw reads | SARS-CoV-2 reads |
| 1A | 25 | 1203226 | 114 | 347128 | 43388 | 1450538 | 163966 |
| 2A | 25 | 914890 | 93 | 429444 | 65655 | 552344 | 69233 |
| 3A | 25 | 1051024 | 1796 | 1553764 | 514658 | 1402108 | 249371 |
| 4A | 23 | 582276 | 710 | 714620 | 224740 | 728388 | 160780 |
| 5A | 22 | 707544 | 2215 | 1860880 | 579876 | 786298 | 169107 |
| 6A | 19 | 993018 | 87143 | 1664668 | 425561 | ||
| 7A | 23 | 1154510 | 83 | 525678 | 32099 | 670354 | 82981 |
| 8A | 23 | 922546 | 2250 | 2285742 | 647067 | 612772 | 141952 |
| 9A | 16 | 1483578 | 397940 | 1193544 | 482387 | ||
| 10A | 17 | 1051604 | 91172 | 952890 | 345494 | ||
| 11A | 16 | 754600 | 34023 | 504736 | 169564 | ||