TABLE 2.
Selected pineapple transcription factors expressed after flower induction, trans‐binding motifs, and Pfam domain. The best predictions in footprintDB were selected in Arabidopsis thalaiana.
| Gene name | Blast e‐value | Interface similarity | footprinDB PWM/Consensus | Pfam domain |
|---|---|---|---|---|
| Aco000347.1 | 1E−29 | 7/7 |
MA0975.1: s C G CC G CC |
PF00847 AP2 domain |
| Aco001697.1 | 1E−115 | 4/4 |
M0680_1.02: ga A T G w A y C T g M0370: ry G T C y A G r T t C A ww |
PF04873 Ethylene insensitive 3 |
| Aco001844.1 | 3E−34 | 7/7 |
RAP2.3: rg C G CC G C ma |
PF00847 AP2 domain |
| Aco002115.1 | 2E−56 | 7/13 |
M0821_1.02: y G T A C GG wm |
PF12041 Transcriptional regulator DELLA protein N terminal |
| Aco004839.1 | 7E−84 | 8/8 |
MA0940.1: my AAAAA wr G AAA |
PF00319 SRF‐type TF |
| Aco005324.1 | 4E−32 | 7/7 |
ERF1/ERF2/ERF5: A G CC G CC A ATERF1_2: yt G CC GG C ar |
PF00847 AP2 domain |
| Aco005453.1 | 6E−22 | 4/6 |
M0821_1.02: y G T A C GG wm |
PF12041 Transcriptional regulator DELLA protein N terminal |
| Aco005770.1 | 7E−16 | 4/7 |
MA0988.1: hg C A C G T G cd |
PF00249 Myb‐like DNA‐binding domain |
| Aco006074.1 | 1e−33 | 7/7 |
MA0975.1: s C G CC G CC |
PF00847 AP2 domain |
| Aco006233.1 | 5E−12 | ‐ |
M0422: A r TT AA TT A rt |
PF00046 Homeobox domain |
| Aco010600.1 | 2E−54 | 7/7 |
ERF1: rs C G CC G CC a MA0567.1: m G CC G CC a |
PF00847 AP2 domain |
| Aco012428.1 | 2E−79 | 7/8 |
MA0940.1: my AAAAA wr G AAA |
PF00319 SRF‐type TF |
| Aco014268.1 | 8E−34 | 7/7 |
M0061: kygr C GG C GG m C gwg UN0363.1: cwc C t CC G CC G cc |
PF00847 AP2 domain |
| Aco015104.1 | 1E−27 | 7/8 |
MA0940.1: my AAAAA wr G AAA |
PF00319 SRF‐type TF |
| Aco015335.1 | 4E−61 | 4/4 |
M0680_1.02: ga A T G w A y C T g M0370: ry G T C y A G r T t C A ww |
PF04873 Ethylene insensitive 3 |
| Aco015382.1 | 4E−22 | 8/8 |
6ryi_DE: A T C A cg T G A 6ryl_DE: T y AA T G C G TT s T M0436: T G A w T G A w T G a M0447: T C A w T C A w T y A |
PF00046 Homeobox domain |
| Aco017254.1 | 9E−52 | 20/20 |
MA1038.1: d GG T A GG T ara |
PF00249 Myb‐like DNA‐binding domain |
| Aco017455.1 | 5E−17 | 3/3 |
M0468: s C G A a AA wwt C GG ar |
PF03195 Protein of unknown function DUF260 |
| Aco017871.1 | 3E−125 | 4/4 |
M0680_1.02: ga A T G w A y C T g M0370: ry G T C y A G r T t C A ww |
PF04873 Ethylene insensitive 3 |
| Aco018980.1 | 2E−37 | 9/9 |
ORA47: cr CC G A CC A a ORA47_2: k G C G CC G m C t MA1048.1: r CC G A CC A |
PF00847 (AP2 domain) |
| Aco019059.1 | 5E−24 | 2/4 |
2vy1_A: T GG T nnn T A |
PF01698 (Floricaula/Leafy protein) |
| Aco031731.1 | 4E‐50 | 7/11 |
M0821_1.02: y G T A C GG wm |
PF12041 Transcriptional regulator DELLA protein N terminal |