TABLE 4.
Genomic characteristics of the phages used in this study c
| Phage | Single-copy genome (kb) | Direct terminal repeats (bp) | GC% | Annotated genes (protein, tRNA) | Assigned genus a |
|---|---|---|---|---|---|
| LL | 93,607 | 1,192 | 49.6 | 195, 17 | Pakpunavirus |
| EM | 93,583 | 1,192 | 49.6 | 193, 17 | Pakpunavirus |
| 109 | 65,597 | No b | 55.0 | 103, 0 | Pbunavirus |
| EC | 66,591 | No b | 55.7 | 100 0 | Pbunavirus |
a
All listed genera are within viruses Duplodnaviria, Heunggongvirae, Uroviricota, and Caudoviricetes. Genus assignments for 109 and E2005-C are based on ≥70% similarity to representative members of the Pbunavirus genus (Fig. S1; VIRIDIC web version 1, default settings) (28).
b
Read mapping data indicated a sequence-specific packaging initiation site similar to Pa193 (NC_050148.1) and PA8P1 (NC_048806.1), but not fixed-length terminal repeats.
c
EM, phage EM-T3762627-2_AH; EC, phage E2005-C; 109, phage 109; LL, phage LL-5504721-AH; GC, guanine-cytosine percentage.